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  1. Article

    Open Access

    Transcriptional dynamics during Rhodococcus erythropolis infection with phage WC1

    Belonging to the Actinobacteria phylum, members of the Rhodococcus genus thrive in soil, water, and even intracellularly. While most species are non-pathogenic, several cause respiratory disease in animals and, m...

    Dana L. Willner, Sudip Paudel, Andrew D. Halleran, Grace E. Solini in BMC Microbiology (2024)

  2. Article

    Open Access

    Single cell transcriptome sequencing of inspiratory neurons of the preBötzinger complex in neonatal mice

    Neurons in the brainstem preBötzinger complex (preBötC) generate the rhythm and rudimentary motor pattern for inspiratory breathing movements. We performed whole-cell patch-clamp recordings from inspiratory ne...

    Caroline K. David, Yae K. Sugimura, Prajkta S. Kallurkar in Scientific Data (2022)

  3. Article

    Open Access

    Transcriptomes of electrophysiologically recorded Dbx1-derived respiratory neurons of the preBötzinger complex in neonatal mice

    Breathing depends on interneurons in the preBötzinger complex (preBötC) derived from Dbx1-expressing precursors. Here we investigate whether rhythm- and pattern-generating functions reside in discrete classes of ...

    Prajkta S. Kallurkar, Maria Cristina D. Picardo, Yae K. Sugimura in Scientific Reports (2022)

  4. No Access

    Article

    Mercury delays cerebellar development in a model songbird species, the zebra finch

    Mercury exposure can disrupt development of the cerebellum, part of the brain essential for coordination of movement through a complex environment, including flight. In precocial birds, such as fowl, the cereb...

    Sheila A. Scoville, Claire W. Varian-Ramos, G. Alden Adkins in Ecotoxicology (2020)

  5. Article

    Open Access

    The genetic insulator RiboJ increases expression of insulated genes

    A primary objective of synthetic biology is the construction of genetic circuits with behaviors that can be predicted based on the properties of the constituent genetic parts from which they are built. However...

    Kalen P. Clifton, Ethan M. Jones, Sudip Paudel in Journal of Biological Engineering (2018)

  6. Article

    Open Access

    Transcriptome of neonatal preBötzinger complex neurones in Dbx1 reporter mice

    We sequenced the transcriptome of brainstem interneurons in the specialized respiratory rhythmogenic site dubbed preBötzinger Complex (preBötC) from newborn mice. To distinguish molecular characteristics of th...

    John A. Hayes, Andrew Kottick, Maria Cristina D. Picardo in Scientific Reports (2017)