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  1. Article

    Open Access

    Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

    The metabolic capabilities of acetogens to ferment a wide range of sugars, to grow autotrophically on H2/CO2, and more importantly on synthesis gas (H2/CO/CO2) make them very attractive candidates as production h...

    Harish Nagarajan, Merve Sahin, Juan Nogales, Haythem Latif in Microbial Cell Factories (2013)

  2. No Access

    Article

    Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association

    Syntrophic associations are central to microbial communities and thus have a fundamental role in the global carbon cycle. Despite biochemical approaches describing the physiological activity of these communiti...

    Harish Nagarajan, Mallory Embree, Amelia-Elena Rotaru in Nature Communications (2013)

  3. Article

    Open Access

    Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome

    Genome sequences of the Chinese hamster and six Chinese hamster ovary cell lines provide a resource to aid in improving production of recombinant proteins.

    Nathan E Lewis, **n Liu, Yuxiang Li, Harish Nagarajan in Nature Biotechnology (2013)

  4. No Access

    Article

    Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks

    Bacteria contain multiple sigma factors, each targeting diverse, but often overlap** sets of promoters, thereby forming a complex network. The layout and deployment of such a sigma factor network directly im...

    Yu Qiu, Harish Nagarajan, Mallory Embree, Wendy Shieu, Elisa Abate in Nature Communications (2013)

  5. No Access

    Article

    The microbiome extends to subepidermal compartments of normal skin

    Commensal microbes on the skin surface influence the behaviour of cells below the epidermis. We hypothesized that bacteria or their products exist below the surface epithelium and thus permit physical interact...

    Teruaki Nakatsuji, Hsin-I. Chiang, Shangi B. Jiang in Nature Communications (2013)

  6. No Access

    Article

    Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

  7. Our understanding of genotype–phenotype relationships has classically been qualitative, but recent advances are enabling us to overcome conceptual and technolo...

  8. Nathan E. Lewis, Harish Nagarajan, Bernhard O. Palsson in Nature Reviews Microbiology (2012)

  9. Article

    Open Access

    The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line

    Since 1987, immortalized cells from the ovary of a Chinese hamster have been the workhorse for producing recombinant therapeutics, including monoclonal antibodies, blood factors, hormones, growth factors and e...

    Xun Xu, Harish Nagarajan, Nathan E Lewis, Shengkai Pan, Zhiming Cai in Nature Biotechnology (2011)