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  1. No Access

    Article

    The multimodality cell segmentation challenge: toward universal solutions

    Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to ...

    Jun Ma, Ronald **e, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta in Nature Methods (2024)

  2. Article

    Open Access

    Structural insights into human exon-defined spliceosome prior to activation

    Spliceosome is often assembled across an exon and undergoes rearrangement to span a neighboring intron. Most states of the intron-defined spliceosome have been structurally characterized. However, the structur...

    Wenyu Zhang, **aofeng Zhang, **echao Zhan, Rui Bai, Jianlin Lei in Cell Research (2024)

  3. Article

    Open Access

    In vitro generation of genetic diversity for directed evolution by error-prone artificial DNA synthesis

    Generating genetic diversity lies at the heart of directed evolution which has been widely used to engineer genetic parts and gene circuits in synthetic biology. With the ever-expanding application of directed...

    Baowei Wang, Yang Liu, Xuelian Bai, Huijuan Tian, Lina Wang in Communications Biology (2024)

  4. Article

    Open Access

    The bacterial metabolite, lithocholic acid, has antineoplastic effects in pancreatic adenocarcinoma

    Lithocholic acid (LCA) is a secondary bile acid. LCA enters the circulation after bacterial synthesis in the gastrointestinal tract, reaches distantly located cancer cells, and influences their behavior. LCA w...

    Szandra Schwarcz, Patrik Kovács, Petra Nyerges, Gyula Ujlaki in Cell Death Discovery (2024)

  5. Article

    Open Access

    Induced dual-target rebalance simultaneously enhances efficient therapeutical efficacy in tumors

    Multiple gene abnormalities are major drivers of tumorigenesis. NF-κB p65 overactivation and cGAS silencing are important triggers and genetic defects that accelerate tumorigenesis. However, the simultaneous c...

    **aoyu Zhang, Tianyi Ding, Fan Yang, Haowen Xu, Jixing Zhang in Cell Death Discovery (2024)

  6. Article

    Open Access

    The role of USP7-YY1 interaction in promoting colorectal cancer growth and metastasis

    Colorectal cancer (CRC) remains a significant global health issue with high incidence and mortality. Yin Yang 1 (YY1) is a powerful transcription factor that acts dual roles in gene activation and repression. ...

    Zhi-Ying Shao, Wen-Dong Yang, Hui Qiu, Zhi-Hong He, Meng-Ru Lu in Cell Death & Disease (2024)

  7. Article

    Open Access

    The mechanoreceptor Piezo is required for spermatogenesis in Bombyx mori

    The animal sperm shows high diversity in morphology, components, and motility. In the lepidopteran model insect, the silkworm Bombyx mori, two types of sperm, including nucleate fertile eupyrene sperm and anuclea...

    Zhongjie Zhang, **ao**g Liu, Bo Hu, Kai Chen, Ye Yu, Chenxin Sun, Dalin Zhu in BMC Biology (2024)

  8. Article

    Open Access

    Genome-wide detections for runs of homozygosity and selective signatures reveal novel candidate genes under domestication in chickens

    Indigenous chickens were developed through a combination of natural and artificial selection; essentially, changes in genomes led to the formation of these modern breeds via admixture events. However, their co...

    **aodong Tan, Lu Liu, Jie Dong, Minjie Huang, Jiawen Zhang, Qinghai Li in BMC Genomics (2024)

  9. Article

    Open Access

    Genome-wide association analysis explores the genetic loci of amino acid content in duck’s breast muscle

    Amino acids are the basic components of protein and an important index to evaluate meat quality. With the rapid development of genomics, candidate regions and genes affecting amino acid content in livestock an...

    Rui Wang, Yinjuan Lu, **g**g Qi, Yang **, Zhenyang Shen, Grace Twumasi in BMC Genomics (2024)

  10. Article

    Open Access

    Mercury contamination is an invisible threat to declining migratory shorebirds along the East Asian-Australasian Flyway

    Exposure to pollutants is a potentially crucial but overlooked driver of population declines in shorebirds along the East Asian-Australasian Flyway. We combined knowledge of moult strategy and life history wit...

    Yanju Ma, Chi-Yeung Choi, Lihai Shang, Marcel Klaassen, Zhijun Ma in Communications Biology (2024)

  11. Article

    Open Access

    Differences in archaeal diversity and potential ecological functions between saline and hypersaline lakes on Qinghai-Tibet Plateau were driven by multiple environmental and non-environmental factors beyond the salinity

    Saline lakes are home to various archaea that play special and crucial roles in the global biogeochemical cycle. The Qinghai-Tibet Plateau hosts a large number of lakes with diverse salinity ranging from 0.1 t...

    Yaqiong Wang, Wenxin Li, Guoyuan Bao, Mohan Bai, Huike Ye in BMC Microbiology (2024)

  12. No Access

    Article

    Elucidation of genes enhancing natural product biosynthesis through co-evolution analysis

    Streptomyces has the largest repertoire of natural product biosynthetic gene clusters (BGCs), yet develo** a universal engineering strategy for each Streptomyces species is challenging. Given that some Streptom...

    **nran Wang, Ningxin Chen, Pablo Cruz-Morales, Biming Zhong in Nature Metabolism (2024)

  13. No Access

    Article

    Genetically optimizing soybean nodulation improves yield and protein content

    Symbiotic nitrogen fixation in legume nodules requires substantial energy investment from host plants, and soybean (Glycine max (L.) supernodulation mutants show stunting and yield penalties due to overconsumptio...

    **angbin Zhong, Jie Wang, **aolei Shi, Mengyan Bai, Cuicui Yuan in Nature Plants (2024)

  14. No Access

    Article

    A spatial transcriptome map of the develo** maize ear

    A comprehensive understanding of inflorescence development is crucial for crop genetic improvement, as inflorescence meristems give rise to reproductive organs and determine grain yield. However, dissecting in...

    Yuebin Wang, Yun Luo, **ng Guo, Yunfu Li, Jiali Yan, Wenwen Shao in Nature Plants (2024)

  15. Article

    Open Access

    Machine learning assists prediction of genes responsible for plant specialized metabolite biosynthesis by integrating multi-omics data

    Plant specialized (or secondary) metabolites (PSM), also known as phytochemicals, natural products, or plant constituents, play essential roles in interactions between plants and environment. Although many res...

    Wenhui Bai, Cheng Li, Wei Li, Hai Wang, **aohong Han, Peipei Wang, Li Wang in BMC Genomics (2024)

  16. Article

    Open Access

    GATA3 functions downstream of BRCA1 to promote DNA damage repair and suppress dedifferentiation in breast cancer

    Inadequate DNA damage repair promotes aberrant differentiation of mammary epithelial cells. Mammary luminal cell fate is mainly determined by a few transcription factors including GATA3. We previously reported...

    Xuejie Wang, Feng Bai, **ong Liu, Bin Peng, **ngzhi Xu, Hongquan Zhang in BMC Biology (2024)

  17. Article

    Open Access

    ANXA9 facilitates S100A4 and promotes breast cancer progression through modulating STAT3 pathway

    Breast cancer has the highest global incidence and mortality rates among all cancer types. Abnormal expression of the Annexin family has been observed in different malignant tumors, including upregulated ANXA9...

    **qian Zhou, Junyong Zhao, Tao Yan, Danrong Ye, Yuying Wang in Cell Death & Disease (2024)

  18. Article

    Open Access

    An oncolytic virus delivering tumor-irrelevant bystander T cell epitopes induces anti-tumor immunity and potentiates cancer immunotherapy

    Tumor-specific T cells are crucial in anti-tumor immunity and act as targets for cancer immunotherapies. However, these cells are numerically scarce and functionally exhausted in the tumor microenvironment (TM...

    **angyu Chen, **g Zhao, Shuai Yue, Ziyu Li, **ang Duan, Yao Lin in Nature Cancer (2024)

  19. Article

    Open Access

    Impacts of longitudinal water curtain cooling system on transcriptome-related immunity in ducks

    The closed poultry houses integrated with a longitudinal water curtain cooling system (LWCCS) are widely used in modern poultry production. This study showed the variations in environmental conditions in close...

    Qian Hu, Tao Zhang, Hua He, Fajun Pu, Rong** Zhang, Liang Li, Jiwei Hu in BMC Genomics (2024)

  20. No Access

    Article

    Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBPα

    Pioneer transcription factors are vital for cell fate changes. PU.1 and C/EBPα work together to regulate hematopoietic stem cell differentiation. However, how they recognize in vivo nucleosomal DNA targets rem...

    Tengfei Lian, Ruifang Guan, Bing-Rui Zhou in Nature Structural & Molecular Biology (2024)

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