Abstract
The initial stages of HIV-1 infection involve the transport of the viral core into the nuclear compartment. The presence of the HIV-1 core in the nucleus triggers the translocation of CPSF6/CPSF5 from paraspeckles into nuclear speckles, forming puncta-like structures. While this phenomenon is well-documented, the efficiency of CPSF6 translocation to nuclear speckles upon HIV-1 infection varies depending on the type of cell used. In some human cell lines, only 1–2% of the cells translocate CPSF6 to nuclear speckles when exposed to a 95% infection rate. To address the issue that only 1–2% of cells translocate CPSF6 to nuclear speckles when a 95% infection rate is achieved, we screened several human cell lines and identified a human a cell line in which approximately 85% of the cells translocate CPSF6 to nuclear speckles when 95% infection rate is achieved. This cellular system has enabled the development of a robust fluorescence microscopy method to quantify the translocation of CPSF6 into nuclear speckles following HIV-1 infection. This assay holds the potential to support studies aimed at understanding the role of CPSF6 translocation to nuclear speckles in HIV-1 infection. Additionally, since the translocation of CPSF6 into nuclear speckles depends on the physical presence of the viral core in the nucleus, our method also serves as a reporter of HIV-1 nuclear import.
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References
Dharan A, Bachmann N, Talley S, Zwikelmaier V, Campbell EM (2020) Nuclear pore blockade reveals that HIV-1 completes reverse transcription and uncoating in the nucleus. Nat Microbiol 5(9):1088–1095. https://doi.org/10.1038/s41564-020-0735-8
Selyutina A, Persaud M, Lee K, KewalRamani V, Diaz-Griffero F (2020) Nuclear import of the HIV-1 Core precedes reverse transcription and uncoating. Cell Rep 32(13):108201. https://doi.org/10.1016/j.celrep.2020.108201
Burdick RC, Li C, Munshi M, Rawson JMO, Nagashima K, Hu WS, Pathak VK (2020) HIV-1 uncoats in the nucleus near sites of integration. Proc Natl Acad Sci USA 117(10):5486–5493. https://doi.org/10.1073/pnas.1920631117
Francis AC, Marin M, Singh PK, Achuthan V, Prellberg MJ, Palermino-Rowland K, Lan S, Tedbury PR, Sarafianos SG, Engelman AN, Melikyan GB (2020) Publisher correction: HIV-1 replication complexes accumulate in nuclear speckles and integrate into speckle-associated genomic domains. Nat Commun 11(1):6165. https://doi.org/10.1038/s41467-020-20152-w
Rensen E, Mueller F, Scoca V, Parmar JJ, Souque P, Zimmer C, Di Nunzio F (2021) Clustering and reverse transcription of HIV-1 genomes in nuclear niches of macrophages. EMBO J 40(1):e105247. https://doi.org/10.15252/embj.2020105247
Ilik IA, Aktas T (2022) Nuclear speckles: dynamic hubs of gene expression regulation. FEBS J 289(22):7234–7245. https://doi.org/10.1111/febs.16117
Ilik IA, Aktas T (2021) Nuclear speckles: dynamic hubs of gene expression regulation. FEBS J. https://doi.org/10.1111/febs.16117
Galganski L, Urbanek MO, Krzyzosiak WJ (2017) Nuclear speckles: molecular organization, biological function and role in disease. Nucleic Acids Res 45(18):10350–10368. https://doi.org/10.1093/nar/gkx759
Lamond AI, Spector DL (2003) Nuclear speckles: a model for nuclear organelles. Nat Rev Mol Cell Biol 4(8):605–612. https://doi.org/10.1038/nrm1172
Spector DL, Landon S, O’Keefe RT (1993) Organization of RNA polymerase II transcription and pre-mRNA splicing within the mammalian cell nucleus. Biochem Soc Trans 21(4):918–920. https://doi.org/10.1042/bst0210918
Fu XD, Maniatis T (1990) Factor required for mammalian spliceosome assembly is localized to discrete regions in the nucleus. Nature 343(6257):437–441. https://doi.org/10.1038/343437a0
Selyutina A, Hu P, Miller S, Simons LM, Yu HJ, Hultquist JF, Lee K, KewalRamani VN, Diaz-Griffero F (2022) GS-CA1 and lenacapavir stabilize the HIV-1 core and modulate the core interaction with cellular factors. iScience 25(1):103593. https://doi.org/10.1016/j.isci.2021.103593
Luchsinger C, Lee K, Mardones GA, KewalRamani VN, Diaz-Griffero F (2023) Formation of nuclear CPSF6/CPSF5 biomolecular condensates upon HIV-1 entry into the nucleus is important for productive infection. Sci Rep 13(1):10974. https://doi.org/10.1038/s41598-023-37364-x
Diaz-Griffero F, Perron M, McGee-Estrada K, Hanna R, Maillard PV, Trono D, Sodroski J (2008) A human TRIM5alpha B30.2/SPRY domain mutant gains the ability to restrict and prematurely uncoat B-tropic murine leukemia virus. Virology 378(2):233–242. https://doi.org/10.1016/j.virol.2008.05.008. S0042-6822(08)00310-3 [pii]
Acknowledgments
This work was supported by an NIH grant AI087390 to F.D.-G. We are grateful to the NIH AIDS repository for providing plasmids and antibodies.
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Luchsinger, C., Diaz-Griffero, F. (2024). Detection of CPSF6 in Biomolecular Condensates as a Reporter of HIV-1 Nuclear Import. In: Prasad, V.R., Kalpana, G.V. (eds) HIV Protocols . Methods in Molecular Biology, vol 2807. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3862-0_9
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DOI: https://doi.org/10.1007/978-1-0716-3862-0_9
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