Abstract
Microscale thermophoresis (MST) is an emerging technology for studying a broad range of biomolecular interactions with a high sensitivity. The affinity constant can be obtained for a wide range of molecules within minutes based on reactions in microliters. Here we describe the application of MST in quantifying protein–carbohydrate interactions. A CBM3a and a CBM4 are titrated with insoluble substrate (cellulose nanocrystal) and soluble oligosaccharide (xylohexaose), respectively.
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References
Abbott DW, Boraston AB (2012) Quantitative approaches to the analysis of carbohydrate-binding module function, 1st ed. Methods Enzymol. https://doi.org/10.1016/B978-0-12-415931-0.00011-2
Duhr S, Braun D (2006) Thermophoretic depletion follows boltzmann distribution. Phys Rev Lett 96:1–4. https://doi.org/10.1103/PhysRevLett.96.168301
Duhr S, Braun D (2006) Why molecules move along a temperature gradient. Proc Natl Acad Sci U S A 103:19678–19682. https://doi.org/10.1073/pnas.0603873103
Jerabek-Willemsen M, André T, Wanner R et al (2014) MicroScale thermophoresis: interaction analysis and beyond. J Mol Struct 1077:101–113. https://doi.org/10.1016/j.molstruc.2014.03.009
Baaske P, Wienken CJ, Reineck P et al (2010) Optical thermophoresis for quantifying the buffer dependence of aptamer binding. Angew Chemie Int Ed 49:2238–2241. https://doi.org/10.1002/anie.200903998
Tormo J, Lamed R, Chirino AJ et al (1996) Crystal structure of a bacterial family-III cellulose-binding domain: a general mechanism for attachment to cellulose. EMBO J 15:5739–5751
Wu H, Ioannou E, Henrissat B, Montanier CY et al (2021) Multimodularity of a GH10 xylanase found in the termite gut metagenome. Appl Environ Microbiol 87(3). https://doi.org/10.1128/AEM.01714-20
Martinez T, Texier H, Nahoum V et al (2015) Probing the functions of carbohydrate binding modules in the cbel protein from the oomycete phytophthora parasitica. PLoS One 10:1–14. https://doi.org/10.1371/journal.pone.0137481
Blake AW, Mccartney L, Flint JE et al (2006) Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes. J Biol Chem 281:29321–29329. https://doi.org/10.1074/jbc.M605903200
Gasteiger E, Hoogland C, Gattiker A et al (2005) Protein identification and analysis tools on the ExPASy server. In: Proteomics protocols handbook. Humana Press, Totowa, pp 571–607
Acknowledgment
We acknowledge the Fédération de Recherche Agrobiosciences, Interactions et Biodiversité (FR 3450), CNRS, Université de Toulouse, UPS, Castanet-Tolosan, France, and the IDEX “UNITI” Université de Toulouse (GO-AHEAD project) for the NanoTemper Monolith NT.115 facilities.
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Wu, H., Montanier, C.Y., Dumon, C. (2023). Quantifying CBM–Carbohydrate Interactions Using Microscale Thermophoresis. In: Abbott, D.W., Zandberg, W.F. (eds) Carbohydrate-Protein Interactions. Methods in Molecular Biology, vol 2657. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3151-5_7
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DOI: https://doi.org/10.1007/978-1-0716-3151-5_7
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