Abstract
Cotton leaf curl disease (CLCuD) caused by Begomoviruses is a significant constraint to cotton production in Pakistan. Breeding for resistance is a key strategy to manage the disease. However, develo** varieties with stable resistance and good fiber quality poses a challenge. Therefore, the study aimed to evaluate 71 cotton genotypes, including 67 accessions from Pakistan, three from Turkey and one from India, for resistance to CLCuD and yield traits at two locations (Faisalabad and Vehari) in Punjab. The association between traits was analyzed. A field trial was conducted using a randomized complete block design with three replications. Genotypes were evaluated for CLCuD severity, yield, and fiber traits. Correlation and factor analyses were done. The results showed significant variation among genotypes for CLCuD resistance and other characteristics. Some genotypes like FH-490 and FH-444 showed high yield, fiber length and strength, and tolerance to CLCuD. These could be directly used as parent lines in breeding programs. Furthermore, the factor analyses showed that at CRS, Faisalabad 3 PCs have eigenvalue > 1 with a contribution of 69.86%. However, at CRS, Vehari, these three components contributed 66.98% of the total variation in the cotton genotypes assessed for CLCuD, yield and fibre-related traits. Screening criteria were based on virus tolerance and performance of genotypes concerning superior boll number, sympodial branches and boll weight, and plant height. The study identified promising cotton lines with CLCuD tolerance and production traits. Character associations provide insights for breeding programs to develop cultivars with integrated disease resistance and superior fiber quality.
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References
Afzal M, Saeed S, Riaz H, Ishtiaq M, Habib ur Rahman M (2023) Transmission efficiency of cotton leaf curl Khokhran virus/cotton leaf curl Multan betasatellite complex by two whitefly cryptic species in Pakistan. Int J Trop Insect Sci 43(3):819–830. https://doi.org/10.1007/s42690-023-00991-y
Ahmed Z (1999) Prospects and bottlenecks of cotton crop in Pakistan. Pak Cotton Grow 3:6–7
Akhtar KP, Khan AI, Hussain M, Haq MA, Khan MSI (2003) Upland cotton varietal response to cotton leaf curl virus (CLCuV). Trop Agric Res Ext 5:29–34
Akhtar KP, Khan MKR, Ahmad M, Sarwar N, Ditta A (2009) Partial resistance of a cotton mutant to cotton leaf curl Burewala virus. Span j agric res 8:1098–1104
Akhtar KP, Haidar S, Khan MKR, Ahmad M, Sarwar N, Murtaza MA, Aslam M (2010) Evaluation of Gossypium species for resistance to cotton leaf curl Burewala virus. Ann Appl Biol 157:135–147
Akhtar S, Shahid AA, Shakoor S, Ahmed M, Iftikhar S, Usmaan M, Rao AQ (2023) Tissue specific expression of bacterial cellulose synthase (Bcs) genes improves cotton fiber length and strength. Plant Sci 328:111576
Akter T, Islam AKMA, Rasul MG (2019) Evaluation of genetic diversity in short duration cotton (Gossypium hirsutum L.). J Cotton Res 2:1
Ali MA, Khan IA, Awan SI, Shiraz A, Shahid N (2008) Genetics of fibre quality traits in cotton (Gossypium hirsutum L.). Aust J Crop Sci 2(1):10–17
Ali MA, Jabran K, Awan SI, Abbas A, Zulkiffal M, Acet T, Farooq J, Rehman A (2011) Morpho-physiological diversity and its implications for improving drought tolerance in grain sorghum at different growth stages. Aus J Crop Sci 5:311–320
Ali MA, Farooq J, Batool A et al (2019) Cotton production in Pakistan. In: Khawar J, Bhagirath SC (eds) Cotton production. John Wiley & Sons, New Jersey, pp 249–276
Aqueel R, Badar A, Roy N, Mushtaq Q, Ali AF, Bashir A, Malik KA (2023) Cotton microbiome profiling and cotton leaf curl disease (CLCuD) suppression through microbial consortia associated with Gossypium arboreum. npj Biofilms Microbiomes 9(1):100
Bilal M, Rashid RM, Rehman SU, Iqbal F, Ahmed J, Abid MA, Ahmed Z, Hayat A (2015) Evaluation of wheat genotypes for drought tolerance. J Green Physiol Genet Genomics 1:11–21
Briddon RW, Bull SE, Amin I, Idris AM, Mansoor S, Bedford ID, Dhawan P, Rishi N, Siwatch SS, Abdel-Salam AM, Brown JK, Zafar Y, Markham PG (2003) Diversity of DNA β: a satellite molecule associated with some monopartite begomoviruses. Virology 312:106–121
Brown JK, Bird J (1992) Whitefly-transmitted geminiviruses and associated disorders in the Americas and the Caribbean Basin. Plant Dis 76:220–224
Brown-Guedira GL, Thompson JA, Nelson RL, Warburton ML (2000) Evaluation of genetic diversity of soybean introductions and North American ancestors using RAPD and SSR markers. Crop Sci 40(3):815–823
Dudhe MY, Mulpuri S, Meena HP, Ajjanavara RR, Kodeboyina VS, Adala VR (2020) Genetic variability, diversity and identification of trait-specific accessions from the conserved sunflower germplasm for exploitation in the breeding programme. Agricul Res 9:9–22
Farooq A, Farooq J, Mahmood A, Shakeel A, Rehman KA, Batool A, Riaz M, Shahid MT, Mehboob S (2011) Overviews of cotton leaf curl virus disease (CLCuD) a serious threat to cotton productivity. Aust J Crop Sci 5:1823–1831
Farooq J, Anwar M, Riaz M, Farooq A, Mahmood A, Shahid MT, Rafiq M, Ilahi F (2014) Correlation and path coefficient analyses of earliness, fiber quality and yield contributing traits in cotton (Gossypium hirsutum L.). J Anim Plant Sci 24(3):781–790
Harrison BD, Robinson DJ (1999) Natural genomic and antigenic variation in whitefly-transmitted geminiviruses (Begomoviruses). Annu Rev Phytopathol 37:369–398
Iqbal A, Arshad U, Ayub S, Jabeen A, Saeed M (2023) Bio-priming of seed with Trichoderma sp. and Bacillus sp. leads to improved morpho-physiological parameters related to drought tolerance in maize. Integr Plant Biotechnol 01:43–51
Jabran M, Arshad U, Aslam HMU, Abbas A, Haseeb A, Hussain A, Hussain S, Sabir W, Jabbar A, Ali MA (2021) Multivariate analysis of morpho-physiological and grain yield traits in advance lines of bread wheat under different leaf rust disease regimes. Pak J Agri Sci 58:1463–1471
Jabran M, Ali MA, Zahoor A, Muhae-Ud-Din G, Liu T, Chen W, Gao L (2023) Intelligent reprogramming of wheat for enhancement of fungal and nematode disease resistance using advanced molecular techniques. Front Plant Sci 14:1132699
Khan FZ, Rehman SU, Abid MA, Malik W, Hanif CM, Bilal M, Qanmber G, Latif A, Ashraf J, Farhan U (2015) Exploitation of germplasm for plant yield improvement in cotton (Gossypium hirsutum L.). J Green Physiol Genet Genomics 1:1–10
Khan MI, Haq HA, Ullah K, Arshad M, Majid A (2017) Genetic diversity and correlation studies for cotton leaf curl disease (CLCuD), fiber & yield related attributes in exotic lines of Gossypium arboreum L. Am J Plant Sci 8:615–624
Kwon SH, Torrie JH (1964) Heritability and interrelationship among traits of two soybean population. Crop Sci 4:196–198
La Rosa AD, Grammatikos SA (2019) Comparative life cycle assessment of cotton and other natural fibers for textile applications. Fibers 7(12):101. https://doi.org/10.3390/fib7120101
Latif A, Bilal M, Hussain SB, Ahmed F (2015) Estimation of genetic divergence, association, direct and indirect effects of yield with other attributes in cotton (Gossypium hirsutum L.) using biplot correlation and path coefficient analyses. Trop Plant Res Int J 2(2):120–126
Li Z, Wang X, Yan Z, Guiyin Z, Wu L, **a C, Ma Z (2008) Assessment of genetic diversity in glandless cotton germplasm resources by using agronomic traits and molecular markers. Front Agric China 2:245–252
Lotherop JE, Akins RE, Smith OS (1985) Variability of yield and yield components in IAPIR grain sorghum random mating population means variance components and heritabilities. Crop Sci 25:235–240
Mahmood T, Tahir M, Tanveer M, Mirza MB (1996) Effect of cotton leaf curl virus on yield components and fibre properties of four commercial varieties. Pakistan J Phytopathol 8:68–70
Mangi N, Nazir MF, Wang X, Iqbal MS, Sarfraz Z, Jatoi GH, Shuli F (2021) Dissecting source-sink relationship of subtending leaf for yield and fiber quality attributes in upland cotton (Gossypium hirsutum L.). Plants 10(6):1147
Mansoor S, Khan SH, Bashir A, Saeed M, Zafar Y, Malik KA, Briddon R, Stanley J, Markham PG (1999) Identification of a novel circular single stranded DNA associated with cotton leaf curl disease in Pakistan. Virology 259:190–199
Mei YJ, Zhou JP, Xu HM, Zhu SJ (2012) Development of sea island cotton (Gossypium barbadense L.) core collection using genotypic values. Aust J Crop Sci 6(4):673–680
Mushtaq R, Shahzad K, Mansoor S, Shah ZH, Alsamadany H, Mujtaba T et al (2018) Exploration of cotton leaf curl virus resistance genes and their screening in Gossypium arboreum by targeting resistance gene analogues. Aob Plants 10(6):ply67
Nadeem S, Riaz Ahmed S, Luqman T, Tan DK, Maryum Z, Akhtar KP et al (2024) A comprehensive review on Gossypium hirsutum resistance against cotton leaf curl virus. Front Genet 15:1306469
Qayyum A, Murtaza N, Azhar FM, Malik W (2009) Biodiversity and nature of gene action for oil and protein contents in Gossypium hirsutum L. J Food Agric Environ 7(2):590–593
Rabbani MA, Iwabuchi A, Murakami Y, Suzuki T & Takayanagi K (1998) Phenotypic variation and the relationships among mustard (Brassica juncea L.) germplasm from Pakistan. Euphytica 101:357-366
Rathinavel K, Kavitha H, Priyadharshini C (2017) Assessment of genetic variability and correlation analyses of seed and seed cotton yield attributing traits of tetraploid cotton genotypes (G. hirsutum L.). Electron J Plant Breed 8(4):1275–1283
Sabar G, Jabran M, Hussain A, Hussain S, Sabir W, Zulkiffal M, Ahmed MS, Joyia FA, Ali MA (2021) Field-based assessment of genetic diversity for leaf rust resistance and yield attributes in the locally developed wheat cultivars using multivariate analysis. Pak J Agri Sci 58:1813–1823
Saeed F, Farooq J, Mahmood A, Riaz M, Hussain T, Majeed A (2014) Assessment of genetic diversity for cotton leaf curl virus (CLCuD), fiber quality and some morphological traits using different statistical procedures in Gossypium hirsutum L. Aust J Crop Sci 8(3):442–447
Sarfraz Z, Iqbal MS, Pan Z, Jia Y, He S, Wang Q, Qin H, Liu J, Liu H, Yang J, Ma Z (2018) Integration of conventional and advanced molecular tools to track footprints of heterosis in cotton. Bmc Genomics 19(1):1–19
Satish Y (2021) Genetic diversity analyses in American cotton (Gossypium hirsutum L.) genotypes. Electron J Plant Breed 12(4):1448–1453
Sattar MN, Kvarnheden A, Saeed M, Briddon RW (2013) Cotton leaf curl disease—an emerging threat to cotton production worldwide. J Gen Virol 94:695–710
Shahzad K, Mubeen I, Zhang M, Zhang X, Wu J, **ng C (2022) Progress and perspective on cotton breeding in Pakistan. J Cotton Res 5(1):29
Sneath PHA & Sokal RR (1973) Numerical taxonomy: the principles and practice ofnumerical classification. W. F. Free-Man and Co., San Francisco, pp. 573
Soomro AW, Anjum R, Soomro K, Ahsan MZ, Arshad M (2017) Evaluation of genetic diversity for cotton leaf curl virus (CLCuV), yield, GOT% and fiber traits in exotic germplasm of Gossypium hirsutum. Fuuast J Biol 7(2):199–205
Steel RGD, Torrie JH, Dickey DA (1997) Principles and procedures of statistics—a biometrical approach. McGraw-Hill, New York
Umar HM, Ur-Rehman S, Bilal M, Atif S, Naqvi H, Manzoor SA, Ghafoor A, Khalid M, Iqbal MT, Qayyoum A, Ahmad F, Malik AI (2014) Evaluation of genetic diversity in pea (Pisum sativum) based on morpho-agronomic characteristics for yield and yield associated traits. J Biodivers Environ Sci 4:321–328
Wang H, Siddiqui MQ, Memon H (2020) Physical structure, properties and quality of cotton. Textile science and clothing technology. Springer, Singapore https://doi.org/10.1007/978-981-15-9169-3_5
Watkins GM (1981) Compendium of cotton diseases. The American phytopathological society, Minnesota
Zafar MM, Jia X, Shakeel A, Sarfraz Z, Manan A et al (2022) Unraveling heat tolerance in upland cotton (Gossypium hirsutum L.) using univariate and multivariate analysis. Front Plant Sci 12:727835
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A. Batool and J. Farooq performed the experiments, analyzed the data and prepared the original manuscript. A. Abbas helped in analysis. M. Jabran and A. Abbas contributed to revisions on the manuscript and analysis. M.A. Ali contributed to supervision, editing, conceptualization, analyzing and interpretation of the data. All the authors also contributed to reviewing and editing of the manuscript. All authors read and approved the final manuscript.
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A. Batool, J. Farooq, M. Jabran, A. Abbas and M.A. Ali declare that they have no competing interests.
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Batool, A., Farooq, J., Jabran, M. et al. Exploring Host Resistance and Character Association in Diverse Cotton Germplasm to Manage Cotton Leaf Curl Disease (CLCuD) at Two Hotspots in Punjab, Pakistan. Journal of Crop Health (2024). https://doi.org/10.1007/s10343-024-01000-z
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DOI: https://doi.org/10.1007/s10343-024-01000-z