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Recent Progress in Microbial Biosynthesis by Coculture Engineering

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Abstract

With the development of metabolic engineering and synthetic biology, a large number of industrially important products has been developed using engineered microorganisms, thereby promoting the sustainable development of society and the economy. However, this approach is challenged by the increasing demand for more complicated biosynthesis or bioconversion tasks. The emergence of coculture engineering, which divides the labor between cocultured strains, presents a new perspective for conducting heterologous biosynthesis and improving the bioproduction performance of target products. This new approach reduces the metabolic burden on each strain and improves the conversion of products beyond the limit of the metabolic capacity of a single microbial strain. Recent advances using coculture engineering for the production of natural products, chemicals and biofuels, and environmental applications are reviewed. Future directions and potential challenges for future research in this field are also discussed.

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REFERENCES

  1. Yuan, S.F. and Alper, H.S., Microb. Cell. Fact., 2019, vol. 18, no. 1, p. 46.

    Article  PubMed  PubMed Central  Google Scholar 

  2. Woolston, B.M., Edgar, S., and Stephanopoulos, G., Annu. Rev. Chem. Biomol. Eng., 2013, vol. 4, pp. 259–288.

    Article  CAS  PubMed  Google Scholar 

  3. Song, H., Ding, M.Z., Jia, X.Q., Ma, Q., and Yuan, Y.J., Chem. Soc. Rev., 2014, vol. 43, no. 20, pp. 6954–6981.

    Article  CAS  PubMed  Google Scholar 

  4. Wang, R., Zhao, S., Wang, Z., and Koffas, MA., Curr. Opin. Biotechnol., 2020, vol. 62, pp. 65–71.

    Article  CAS  PubMed  Google Scholar 

  5. Jones, J.A. and Wang, X., Curr. Opin. Biotechnol., 2018, vol. 53, pp. 33–38.

    Article  CAS  PubMed  Google Scholar 

  6. Chen, T., Zhou, Y., Lu, Y., and Zhang, H., Biotechnol. Lett., 2019, vol. 41, no. 1, pp. 27–34.

    Article  CAS  PubMed  Google Scholar 

  7. Sgobba, E. and Wendisch, V.F., Curr. Opin. Biotechnol., 2020, vol. 62, pp. 72–79.

    Article  CAS  PubMed  Google Scholar 

  8. Johns, N.I., Blazejewski, T., Gomes, A.L., and Wang, H.H., Curr. Opin. Microbiol., 2016, vol. 31, pp. 146–153.

    Article  PubMed  PubMed Central  Google Scholar 

  9. Qian, X., Chen, L., Sui, Y., Chen, C., Zhang, W., Zhou, J., et al., Biotechnol. Adv., 2019, vol. 40, p. 107500.

    Article  PubMed  Google Scholar 

  10. Zhang, H. and Wang, X., Metab. Eng., 2016, vol. 37, pp. 114–121.

    Article  PubMed  Google Scholar 

  11. Tsoi, R., Wu, F., Zhang, C., Bewick, S., Karig, D., and You, L., Proc. Natl. Acad. Sci. U. S. A., 2018, vol. 115, no. 10, pp. 2526–2531.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Ahmadi, M.K. and Pfeifer, B.A., Curr. Opin. Biotechnol., 2016, vol. 42, pp. 7–12.

    Article  CAS  PubMed  Google Scholar 

  13. Jones, J.A., Vernacchio, V.R., Sinkoe, A.L., Collins, S.M., Ibrahim, M.H., Lachance, D.M., et al., Metab. Eng., 2016, vol. 35, pp. 55–63.

    Article  CAS  PubMed  Google Scholar 

  14. Li, Z., Wang, X., and Zhang, H., Metab. Eng., 2019, vol. 54, pp. 1–11.

    Article  CAS  PubMed  Google Scholar 

  15. Jones, J.A., Vernacchio, V.R., Collins, S.M., Shirke, A.N., **u, Y., Englaender, J.A., et al., mBio, 2017, vol. 8, no. 3, art. e00621-17.

    CAS  PubMed  PubMed Central  Google Scholar 

  16. Akdemir, H., Silva, A., Zha, J., Zagorevski, D.V., and Koffas, M.A.G., Metab. Eng., 2019, vol. 55, pp. 290–298.

    Article  CAS  PubMed  Google Scholar 

  17. Chen, Z., Sun, X., Li, Y., Yan, Y., and Yuan, Q., Metab. Eng., 2017, vol. 39, pp. 102–109.

    Article  PubMed  Google Scholar 

  18. Ganesan, V., Li, Z., Wang, X., and Zhang, H., Synth. Syst. Biotechnol., 2017, vol. 2, no. 3, pp. 236–242.

    Article  PubMed  PubMed Central  Google Scholar 

  19. Zhang, H. and Stephanopoulos, G., Biotechnol. J., 2016, vol. 11, no. 7, pp. 981–987.

    Article  CAS  PubMed  Google Scholar 

  20. Zhang, H., Pereira, B., Li, Z., and Stephanopoulos, G., Proc. Natl. Acad. Sci. U. S. A., 2015, vol. 112, no. 27, pp. 8266–8271.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Guo, X., Wang, X., Chen, T., Lu, Y., and Zhang, H., Biochem. Eng. J., 2020, vol. 156, p. 107518.

    Article  CAS  Google Scholar 

  22. Liu, X., Li, X.B., Jiang, J., Liu, Z.N., Qiao, B., Li, F.F., et al., Metab. Eng., 2018, vol. 47, pp. 243–253.

    Article  CAS  PubMed  Google Scholar 

  23. Thuan, N.H., Chaudhary, A.K., Cuong, D.V., and Cuong, N.X., J. Ind. Microbiol. Biotechnol., 2018, vol. 45, no. 3, pp. 175–185.

    Article  PubMed  Google Scholar 

  24. Thuan, N.H., Trung, N.T., Cuong, N.X., Cuong, D.V., Quyen, D.V., and Malla, S., World J. Microbiol. Biotechnol., 2018, vol. 34. no. 6, p. 75.

    Article  PubMed  Google Scholar 

  25. Ahmadi, M.K., Fang, L., Moscatello, N., and Pfeifer, B.A., Metab. Eng., 2016, vol. 38, pp. 382–388.

    Article  CAS  PubMed  Google Scholar 

  26. Cui, H., Song, M.C., Ban, Y.H, Jun, S.Y., Kwon, A.S., Lee, J.Y., and Yoon, Y.J., Microb. Cell. Fact., 2019, vol. 18, no. 1, p. 67.

    Article  PubMed  PubMed Central  Google Scholar 

  27. Niu, F.X., He, X., Wu, Y.Q., and Liu, J.Z., Front. Microbiol., 2018, vol. 9, p. 1623.

    Article  PubMed  PubMed Central  Google Scholar 

  28. Zhou, K., Qiao, K., Edgar, S., and Stephanopoulos G., Nat. Biotechnol., 2015, vol. 33, no. 4, pp. 377–383.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Wang, X., Policarpio, L., Prajapati, D., Li, Z., and Zhang, H., Metab. Eng. Commun., 2019, vol. 10, art. e00110.

    Article  PubMed  PubMed Central  Google Scholar 

  30. Wang, J., Lu, X., Ying, H., Ma, W., Xu, S., Wang, X., et al., Front Microbiol., 2018, vol. 9, p. 1312.

    Article  PubMed  PubMed Central  Google Scholar 

  31. Liu, Y., Yang, S., and Jia, X., J. Ind. Microbiol. Biotechnol., 2020, vol. 47, no. 3, pp. 343–354.

    Article  CAS  PubMed  Google Scholar 

  32. Flores, A.D., Choi, H.G., Martinez, R., Onyeabor, M., Ayla, E.Z., Godar, A., et al., Front. Bioeng. Biotechnol., 2020, vol. 8, p. 329.

    Article  PubMed  PubMed Central  Google Scholar 

  33. Flores, A.D., Ayla, E.Z., Nielsen, D.R., and Wang, X., ACS. Synth. Biol., 2019, vol. 8, no. 5, pp. 1089–1099.

    Article  CAS  PubMed  Google Scholar 

  34. Chen, Y., Wu, Y., Zhu, B., Zhang, G., and Wei, N., PLoS One, 2018, vol. 13, no. 6, art. e0199104.

    Article  PubMed  PubMed Central  Google Scholar 

  35. Saini, M., Chiang, C.J., Li, S.Y., and Chao, Y.P., FEMS Microbiol. Lett., 2016, vol. 363, no. 4, art. fnw008.

    Article  PubMed  Google Scholar 

  36. Wen, Z., Minton, N.P., Zhang, Y., Li, Q., Liu, J., Jiang, Y., and Yang, S., Metab. Eng., 2016, vol. 39, pp. 38–48.

    Article  PubMed  Google Scholar 

  37. Cui, Y., He, J., Yang, K.L., and Zhou, K., Metab. Eng. Commun., 2020, vol. 11, art. e00137.

    Article  PubMed  PubMed Central  Google Scholar 

  38. Martínez, I., Mohamed, M.E., Rozas, D., García, J.L., and Díaz, E., Metab. Eng., 2016, vol. 35, pp. 46–54.

    Article  PubMed  Google Scholar 

  39. Cha, S., Lim, H.G., Kwon, S., Kim, D.H., Kan, C.W., and Jung, G.Y., Metab. Eng., 2021, vol. 64, pp. 146–153.

    Article  CAS  PubMed  Google Scholar 

  40. Liu, Y., Ding, M., Ling, W., Yang, Y., Zhou, X., Li, B.Z., et al., Energ. Environ. Sci., 2017, vol. 10, no. 7, pp. 1600–1609.

    Article  CAS  Google Scholar 

  41. Wang, X., Shao, A., Li, Z., Policarpio, L., and Zhang, H., Biotechnol. J., 2020, vol. 15, no. 9, art. e2000131.

    Article  PubMed  Google Scholar 

  42. Yuan, S.F., Yi, X., Johnston, T.G., and Alper, H.S., Microb. Cell. Fact., 2020, vol. 19, no. 1, p. 143.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Wang, X., Li, Z., Policarpio, L., Koffas, M.A.G., and Zhang, H., Appl. Microbiol. Biotechnol., 2020, vol. 104, no. 11, pp. 4849–4861.

    Article  CAS  PubMed  Google Scholar 

  44. Guo, X., Li, Z., Wang, X., Wang, J., Chala, J., Lu, Y., and Zhang, H., Biotechnol. Bioeng. 2019, vol. 116, no. 12, pp. 3349–3359.

    Article  CAS  PubMed  Google Scholar 

  45. Zhao, C., Sinumvayo, J.P., Zhang, Y., and Li, Y., Metab. Eng., 2019, vol. 55, pp. 111–119.

    Article  CAS  PubMed  Google Scholar 

  46. Sinumvayo, JP, Zhao, C.H., Liu, G.X., Li, Y., and Zhang, Y.P., Bioresour. Bioprocess, 2021, vol. 8, p. 18.

    Article  Google Scholar 

  47. Ben, Said. S. and Or, D., Front. Microbiol., 2017, vol. 8, p. 1125.

    Google Scholar 

  48. Kong, W., Meldgin, D.R., Collins, J.J., and Lu, T., Nat. Chem. Biol., 2018, vol. 14, no. 8, pp. 821–829.

    Article  CAS  PubMed  Google Scholar 

  49. Roell, G.W., Zha, J., Carr, R.R., Koffas, M.A., Fong, S.S., and Tang, Y.J., Microb. Cell. Fact., 2019, vol. 18, no. 1, p. 35.

    Article  PubMed  PubMed Central  Google Scholar 

  50. Liu, F., Mao, J., Kong, W., Hua, Q., Feng, Y., Bashir, R., and Lu, T., Nat. Commun., 2020, vol. 11, no. 1, p. 309.

    Article  PubMed  PubMed Central  Google Scholar 

  51. Erbilgin, O., Bowen, B.P., Kosina, S.M., Jenkins, S., Lau, R.K., and Northen, T.R., BMC. Bioinformatics, 2017, vol. 18, no. 1, p. 57.

    Article  PubMed  PubMed Central  Google Scholar 

  52. Stephens, K., Pozo, M., Tsao, C.Y., Hauk, P., and Bentley, W.E., Nat. Commun., 2019, vol. 10, no. 1, p. 4129.

    Article  PubMed  PubMed Central  Google Scholar 

  53. Papenfort, K. and Bassler, B.L., Nat. Rev. Microbiol., 2016, vol. 14, no. 9, pp. 576–588.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  54. Noonan, A.J.C., Qiu, Y., Ho, J.C.H., Ocampo, J., Vreugdenhil, K.A., Marr, R.A., et al., Synth. Biol. (Oxf)., 2020, vol. 5, no. 1, art. ysaa015.

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ACKNOWLEDGMENTS

This work was funded by the National Natural Science Foundation of China (Grant nos. 31901024 and 32071422), China Postdoctoral Science Foundation funded project (2019M653160), and the Fundamental Research Funds for the Central Universities, Sun Yat-sen University (20lgpy113) for their financial support.

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Correspondence to J.-Z. Liu.

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All authors declare they have no conflict of interest. This article does not contain any studies involving animals or human participants performed by any of the authors.

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Liao, YL., Niu, FX. & Liu, JZ. Recent Progress in Microbial Biosynthesis by Coculture Engineering. Appl Biochem Microbiol 57 (Suppl 1), S1–S10 (2021). https://doi.org/10.1134/S0003683821100033

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