Log in

Siderophore production in groundnut rhizosphere isolate, Achromobacter sp. RZS2 influenced by physicochemical factors and metal ions

  • Original Article
  • Published:
Environmental Sustainability Aims and scope Submit manuscript

Abstract

Growth and siderophore production of plant growth promoting rhizobacteria (PGPR) are influenced by a variety of physicochemical and environmental factors of the rhizosphere. Any factor that affects the growth of PGPR will also influence the production of siderophore and other metabolites produced by PGPR. In order to provide the optimum conditions for good growth and performance of PGPR, it is necessary to know the best physicochemical conditions. The present study describes the effect of various nutrients, physical parameters and metal ions on growth and siderophore production by Achromobacter sp. RZS2 isolated from groundnut rhizosphere. We report siderophore production by Achromobacter sp. RZS2 in a succinic acid medium (SM). Optimization for the production of siderophores was done by using different nitrogen sources, organic acids, amino acids, sugars, media, metal ions, inoculum level, incubation time, and pH values. The optimum conditions for maximum production of siderophores were SM, 30 h incubation at 28 °C, neutral pH, the presence of urea and low stress of iron. However, the stress condition of iron might be a decisive factor for siderophore production. Low stress of ferric iron supported the growth yield while higher level (600 µM and above) completely repressed siderophores. Isolate continued producing siderophore in presence of other heavy metals. The ability of isolate to utilize urea indicated that the microorganism can grow even in the presence of commonly used inorganic fertilizer such as urea. Use of synthetic pesticides pours various metal ions in the soil, these metal ions get incorporated into our food chain and have been the cause of various health hazards. Growth of isolate at a higher level (up to 600 µM of iron) of iron and moderate concentration (100 µM) of other heavy metals makes it a suitable organism for bioremediation of metal ions from agriculture soil.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Arora NK, Verma M (2017) Modified microplate method for rapid and efficient estimation of siderophore produced by bacteria. 3 Biotech 7(6):381

    Google Scholar 

  • Barbhaiya HB, Rao KK (1985) Production of pyoverdin, the fluorescent pigments of Pseudomonas aeruginosa PAO1. FEMS Microbiol Lett 27:233–235

    Article  CAS  Google Scholar 

  • Bhamare HM, Jadhav HP, Sayyed RZ (2018) Statistical optimization for enhanced production of extracellular laccase from Aspergillus flavus isolated from bark scrap**. Environ Sustain 1:159–166

    Article  Google Scholar 

  • Budde AD, Leong SA (1989) Characterization of siderophore from Ustilago mydis. Mycopathology 108:125–133

    CAS  Google Scholar 

  • Chen Z, Li H, Zhao F, Li R (2008) Ultra-sensitive trace metal analysis of water by laser-induced breakdown spectroscopy after electrical-deposition of the analytes on an aluminium surface. J Anal At Spectrom 23(6):871–875

    Article  CAS  Google Scholar 

  • Cleyet-Marcel JC, Larche M, Bertrand H, Rapior S, Pinochet X (2001) Plant growth enhancement by rhizobacteria. In: Morot-Gaudry J-F (ed) Nitrogen assimilation by plants: physiological, biochemical, and molecular aspects. Science Publishers Inc., Plymouth, pp 185–197

    Google Scholar 

  • Cook RJ (2002) Advances in plant health management in the twentieth century. Ann Rev Phytopathol 38:95–116

    Article  Google Scholar 

  • Dave BP, Dube HC (2000) Regulation of siderophore production by iron Fe(III) in certain fungi and Fluorescent pseudomonads. Indian J Exp Biol 38:297–299

    CAS  Google Scholar 

  • de Lorenzo V, Wee S, Herrero M, Page WJ (1987) Operator sequences of the aerobactin operon of plasmid ColIV K30 binding the ferric uptake regulation (fur) repressor. J Bacteriol 169:2624–2630

    Article  Google Scholar 

  • Gangurde NS, Sayyed RZ, Kiran S, Gulati A (2013) Development of eco-friendly bioplastic like PHB by distillery effluent microorganisms. Environ Sci Pollut Res 20(1):488–497

    Article  CAS  Google Scholar 

  • Ghosh P, Ghosh U (2017) Statistical optimization of laccase production byAspergillusflavus PUF5 through submerged fermentation using agro-waste as cheap substrate. Acta Biologica Szegediensis 61(1):25–33

    Google Scholar 

  • Hesse E, O’Brien S, Tromas N, Bayer F, Luján AM, van Veen EM, Hodgson DJ, Buckling A (2018) Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination. Ecol Lett 21(1):117–127

    Article  Google Scholar 

  • Huyer M, Page WJ (1988) Zn2+ increases siderophore production in Azotobacter vinelandii. Appl Environ Microbiol 54:2625–2631

    CAS  Google Scholar 

  • Huyer M, Page WJ (1989) Ferric reductase activity Azotobacter vinelandii and its inhibition by Zn2+. J Bacteriol 171:4031–4037

    Article  CAS  Google Scholar 

  • Jadhav HP, Shaikh SS, Sayyed RZ (2017) Role of hydrolytic enzymes of rhizoflora in biocontrol of fungal phytopathogens: an overview. In: KumarArora Naveen, Mehnaz Samina (eds) Microorganisms for sustainability vol 2 rhizotrophs: plant growth promotion to bioremediation. Springer, Singapore, pp 183–203

    Chapter  Google Scholar 

  • Kersters K, Deley J (1980) In: Goodfellow M, Board RG (eds) Mirobiological classification and identification. Academic Press, New York, pp 273–297

    Google Scholar 

  • Khurana AS, Sharma P (2000) Effect of dual inoculation of phosphate solubilizing bacteria, Bradyrhizobium sp. (cicer) and phosphorus on nitrogen fixation and yield of chickpea. Indian J Pulses Res 13:66–67

    Google Scholar 

  • Kumar P, Thakur S, Dhingra GK, Singh A, Pal MK, Harshvardhan K, Dubey RC, Maheshwari DK (2018) Inoculation of siderophore producing rhizobacteria and their consortium for growth enhancement of wheat plant. Biocatal Agric Biotechnol 15:264–269

    Article  Google Scholar 

  • Meyer JM, Abdallah MA (1978) The fluorescent pigments of fluorescent pseudomonas: biosynthesis, purification, and physicochemical properties. J Gen Microbiol 107:319–328

    Article  CAS  Google Scholar 

  • Mishra VK, Kumar A (2009) Impact of metal nanoparticles on the plant growth promoting rhizobacteria. Dig J Nanomater Biostruct Digest 4:587–592

    Google Scholar 

  • Mukhtar S, Mehnaz S, Mirza MS, Malik KA (2019) Isolation and characterization of bacteria associated with the rhizosphere of halophytes (Salsola stocksii and Atriplex amnicola) for production of hydrolytic enzymes. Braz J Microbiol 50:1–13

    Article  Google Scholar 

  • Neilands JB (1981) Microbial iron compounds. Annu Rev Biochem 50:715–731

    Article  CAS  Google Scholar 

  • Page WJ (1995) The effect of manganese oxides and manganese ions on growth and siderophore production by Azotobacter vinelandii. Biomet 8:30–36

    CAS  Google Scholar 

  • Parker RE (1979) Continuous distribution: tests of significance. In: Parker RE (ed) Introductory statistics for biology, 2nd edn. Cambridge University Press, London, pp 18–42

    Google Scholar 

  • Patel PR, Shaikh SS, Sayyed RZ (2016) Dynamism of PGPR in bioremediation and plant growth promotion in the heavy metal contaminated soil. Indian J Exp Biol 54:286–290

    CAS  Google Scholar 

  • Patel PR, Shaikh SS, Sayyed RZ (2018) Modified chrome azurol S method for detection and estimation of siderophores having an affinity for metal ions other than iron. Environ Sustain 1:81–87

    Article  Google Scholar 

  • Payne SM (1994) Detection, isolation, and characterization of siderophores. In: Clark VL, Bovill PM (eds) Methods in Enzymology. Academic Press, New York, pp 329–344

    Google Scholar 

  • Pediyar V, Adam KA, Badri NN, Patole M, Shouche YS (2002) Aeromonas culicicola sp. nov., from the midgut of Culexquinque fasciatus. Int J Syst Evol Microbiol 52:1723–1728

    Google Scholar 

  • Roesti D, Gaur R, Johri BN, Imfeld G, Sharma S, Kwaljeet K, Aragno M (2006) Plant growth stage, fertilizer management and bio-inoculation of arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria affect the rhizobacterial community structure in rain-fed wheat fields. Soil Biol and Biochem 38:1111–1120

    Article  CAS  Google Scholar 

  • Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor

    Google Scholar 

  • Sayyed RZ, Chincholkar SB (2006) Purification of siderophores of Alcaligenes feacalis on XAD. Biores Technol 97:1026–1029

    Article  CAS  Google Scholar 

  • Sayyed RZ, Chincholkar SB (2010) Growth and siderophore production Alcaligenes faecalis is influenced by heavy metals. Indian J Microbiol 50:179–182

    Article  CAS  Google Scholar 

  • Sayyed RZ, Badgujar MD, Sonawane HM, Mhaske MM, Chincholkar SB (2005) Production of microbial iron chelators (siderophores) by fluorescent Pseudomonads. Indian J Biotechnol 4:484–490

    CAS  Google Scholar 

  • Sayyed RZ, Ilyas N, Tabassum B, Hashem A, Abd-Allah EF, Jadha HP (2019) Plausible role of plant growth-promoting rhizobacteria in future climatic scenario. In: Sobti RC, Arora NK, Kothari R (eds) Environmental biotechnology: for sustainable future. Springer, Singapore, pp 175–197

    Chapter  Google Scholar 

  • Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:46–56

    Article  Google Scholar 

  • Seok Y, Poonguzhali S, Madhaiyan M, Lee G, Tongmin Sa SK (2009) Plant-growth promoting rhizobacteria; plant relations and mechanisms for plant growth promotion. J Agr Sci 25:81–89

    Google Scholar 

  • Shaikh SS, Patel PR, Patel SS, Nikam SD, Rane TU, Sayyed RZ (2014) Production of biocontrol traits by banana field fluorescent Pseudomonads and comparison with chemical fungicide. Indian J Exp Biol 52:917–920

    CAS  Google Scholar 

  • Shaikh SS, Reddy MS, Sayyed RZ (2016) Plant growth promoting rhizobacteria: an eco-friendly approach for sustainable agroecosystem. In: Hakeem KR, Akhtar MS (eds) Plant soil-microbes vol 2 mechanisms and molecular interactions. Springer, Cham, pp 182–201

    Google Scholar 

  • Shaikh SS, Wani SJ, Sayyed RZ (2018) Impact of interactions between rhizosphere and rhizobacteria: a review. J Bacteriol Mycol 5(1):1058

    Google Scholar 

  • Sharma S, Kaur M (2010) Antimicrobial activities of rhizobacterial strains of Pseudomonas and Bacillus strains isolated from rhizosphere soil of carnation. Indian J Microbiol 50:229–232

    Article  Google Scholar 

  • Tamura KNM, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci (USA) 101:11030–11035

    Article  CAS  Google Scholar 

  • Thompson JD, Toby JG, Frederic P, François J, Desmond GH (1997) The CLUSTAL × windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  Google Scholar 

  • Verbon EH, Trapet PL, Stringlis IA, Kruijs S, Bakker PA, Pieterse CM (2017) Iron and immunity. Ann Rev Phytopathol 55:355–375

    Article  CAS  Google Scholar 

  • Weinberg ED (1977) Mineral element control of microbial secondary metabolism. In: Weinberg ED (ed) Microorganisms and mineral. Marcel Dekker, New York, pp 289–316

    Google Scholar 

  • Williiams RJP (1982) Free manganese (II) and Iron (II) cations can act as intracellular cell controls. FEMS Lett 140:3–10

    Google Scholar 

  • Zhao F, Chen Z, Zhang F, Li R, Zhou J (2010) Ultra-sensitive detection of heavy metal ions in tap water by laser-induced breakdown spectroscopy with the assistance of electrical-deposition. Anal Meth 2(4):408–414

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to R. Z. Sayyed.

Ethics declarations

Conflict of interest

All authors declare no conflict of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sayyed, R.Z., Seifi, S., Patel, P.R. et al. Siderophore production in groundnut rhizosphere isolate, Achromobacter sp. RZS2 influenced by physicochemical factors and metal ions. Environmental Sustainability 2, 117–124 (2019). https://doi.org/10.1007/s42398-019-00070-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s42398-019-00070-4

Keywords

Navigation