Log in

Extracellular hydrolytic enzymes produced by halophilic bacteria and archaea isolated from hypersaline lake

  • Original Article
  • Published:
Molecular Biology Reports Aims and scope Submit manuscript

Abstract

The screening of bacteria and archaea from Chott El Jerid, a hypersaline lake in the south of Tunisia, led to the isolation of 68 extremely halophilic prokaryotes growing in media with 15–25% of salt. Assessment of 68 partial 16S rRNA analyzed by amplified rDNA restriction analysis (ARDRA) revealed 15 different bacterial and archaeal taxonomic groups. Based on ARDRA results, phenotypic and hydrolytic activity tests, 20 archaeal and 6 bacterial isolates were selected for sequencing. The halophilic isolates were identified as members of the genera: Salicola, Bacillus, Halorubrum, Natrinema and Haloterrigena. Most of these isolates are able to produce hydrolytic enzymes such as amylase, protease, lipase, cellulase, xylanase, pectinase and some of them showed combined activities. Natrinema genus is an excellent candidate for lipase production. These results indicated that the extremely halophilic archaea and bacteria from Chott El Jerid are a potential source of hydrolytic enzymes and may possess commercial value.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price includes VAT (Germany)

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Amoozegar MA, Malekzadeh F, Malik KA (2003) Production of amylase by newly isolated moderate halophile, Halobacillus sp. strain MA-2. J Microbiol Methods 52:353–359

    Article  CAS  Google Scholar 

  2. Babavalian H, Amoozegar MA, Pourbabaee AA et al (2013) Isolation and identification of moderately halophilic bacteria producing hydrolytic enzymes from the largest hypersaline playa in Iran. Microbiology 82:466–474. https://doi.org/10.1134/S0026261713040176

    Article  CAS  Google Scholar 

  3. Bajpai B, Chaudhary M, Saxena J (2015) Production and characterization of alpha-amylase from an extremely halophilic archaeon, Haloferax sp. HA10. Food Technol Biotechnol 53:11–17. https://doi.org/10.17113/ftb.53.01.15.3824

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Ben Abdallah M, Karray F, Mhiri N et al (2015) Characterization of Sporohalobacter salinus sp. Nov., an anaerobic, halophilic, fermentative bacterium isolated from a hypersaline lake. Int J Syst Evol Microbiol 65:543–548. https://doi.org/10.1099/ijs.0.066845-0

    Article  CAS  PubMed  Google Scholar 

  5. Ben Abdallah M, Karray F, Mhiri N et al (2016) Prokaryotic diversity in a Tunisian hypersaline lake, Chott El Jerid. Extremophiles 20:125–138. https://doi.org/10.1007/s00792-015-0805-7

    Article  CAS  Google Scholar 

  6. Bernfeld P (1955) Amylases, A and B methodology. Enzymology 1986

  7. Bhatnagar T, Boutaiba S, Hacene H et al (2005) Lipolytic activity from Halobacteria: screening and hydrolase production. FEMS Microbiol Lett 248:133–140. https://doi.org/10.1016/j.femsle.2005.05.044

    Article  CAS  PubMed  Google Scholar 

  8. Birbir M, Ogan A, Calli B, Mertoglu B (2004) Enzyme characteristics of extremely halophilic archaeal community in Tuzkoy Salt Mine, Turkey. World J Microbiol Biotechnol 20:613–621

    Article  CAS  Google Scholar 

  9. Boutaiba S, Bhatnagar T, Hacene H et al (2006) Preliminary characterisation of a lipolytic activity from an extremely halophilic archaeon, Natronococcus sp. J Mol Catal B 41:21–26. https://doi.org/10.1016/j.molcatb.2006.03.010

    Article  CAS  Google Scholar 

  10. Camacho RM, Mateos JC, González-Reynoso O et al (2009) Production and characterization of esterase and lipase from Haloarcula marismortui. J Ind Microbiol Biotechnol 36:901–909. https://doi.org/10.1007/s10295-009-0568-1

    Article  CAS  PubMed  Google Scholar 

  11. Cherif S, Mnif S, Hadrich F et al (2011) Strategy for improving extracellular lipolytic activities by a novel thermotolerant Staphylococcus sp. strain. Lipids Health Dis 10:209. https://doi.org/10.1186/1476-511X-10-209

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Cojoc R, Merciu S, Popescu G et al (2009) Extracellular hydrolytic enzymes of halophilic bacteria isolated from a subterranean rock salt crystal. Rom Biotechnol Lett 14:4658–4664

    Google Scholar 

  13. DasSarma S, Arora P (2001) Halophiles. Encycl Life Sci 1:1–9. https://doi.org/10.1002/9780470015902.a0000394.pub3

    Article  Google Scholar 

  14. De Guzmán MN, Vargas V, Antezana H, Svoboda M (2008) Lipolytic enzyme production by halophilic/halotolerant microorganisms isolated from Laguna Verde, Bolivia. Rev Boliv Quim 25:14–23

    Google Scholar 

  15. De Lourdes Moreno M, García MT, Ventosa A, Mellado E (2009) Characterization of Salicola sp. IC10, a lipase- and protease-producing extreme halophile. FEMS Microbiol Ecol 68:59–71. https://doi.org/10.1111/j.1574-6941.2009.00651.x

    Article  CAS  Google Scholar 

  16. De Lourdes Moreno M, Pérez D, García MT, Mellado E (2013) Halophilic bacteria as a source of novel hydrolytic enzymes. Life 3:38–51. https://doi.org/10.3390/life3010038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. El Hidri D, Guesmi A, Najjari A et al (2013) Cultivation-dependant assessment, diversity, and ecology of haloalkaliphilic bacteria in arid saline systems of southern Tunisia. Biomed Res Int 2013. https://doi.org/10.1155/2013/648141

    Article  Google Scholar 

  18. Fukushima T, Mizuki T, Echigo A et al (2005) Organic solvent tolerance of halophilic α-amylase from a Haloarchaeon, Haloarcula sp. strain S-1. Extremophiles 9:85–89. https://doi.org/10.1007/s00792-004-0423-2

    Article  CAS  PubMed  Google Scholar 

  19. Good WA, Hartman PA (1970) Properties of the amylase from Halobacterium halobium. J Bacteriol 104:601–603

    CAS  PubMed  PubMed Central  Google Scholar 

  20. Hammer Ø, Harper D, Ryan P (2001) PAST: Paleontological Statistics Software Package for education and data analysis. Palaeontol Electron 4:9

    Google Scholar 

  21. Hedi A, Fardeau ML, Sadfi N et al (2009) Characterization of Halanaerobaculum tunisiense gen. nov., sp. nov., a new halophilic fermentative, strictly anaerobic bacterium isolated from a hypersaline lake in Tunisia. Extremophiles 13:313–319

    Article  CAS  Google Scholar 

  22. Hutcheon GW, Vasisht N, Bolhuis A (2005) Characterisation of a highly stable α-amylase from the halophilic archaeon Haloarcula hispanica. Extremophiles 9:487–495. https://doi.org/10.1007/s00792-005-0471-2

    Article  CAS  PubMed  Google Scholar 

  23. Karray F, Mezghani M, Mhiri N et al (2016) Scale-down studies of membrane bioreactor degrading anionic surfactants wastewater: isolation of new anionic-surfactant degrading bacteria. Int Biodeterior Biodegrad 114:14–23. https://doi.org/10.1016/j.ibiod.2016.05.020

    Article  CAS  Google Scholar 

  24. Kbir-Ariguib N, Chehimi DBH, Zayani L (2001) Treatment of Tunisian salt lakes using solubility phase diagrams. Pure Appl Chem 73:761–770. https://doi.org/10.1351/pac200173050761

    Article  Google Scholar 

  25. Kharroub K, Aguilera M, Quesada T et al (2006) Salicola salis sp. nov., an extremely halophilic bacterium isolated from Ezzemoul sabkha in Algeria. Int J Syst Evol Microbiol 56:2647–2652

    Article  CAS  Google Scholar 

  26. Kobayashi T, Kanai H, Hayashi T et al (1992) Haloalkaliphilic maltotriose-forming ox-amylase from the archaebacterium Natronococcus sp. strain Ah-36. J Bacteriol 174:3439–3444

    Article  CAS  Google Scholar 

  27. Kouker G, Jaeger KE (1987) Specific and sensitive plate assay for bacterial lipases. Appl Environ Microbiol 53:211–213

    CAS  PubMed  PubMed Central  Google Scholar 

  28. Li X, Yu HY (2014) Characterization of an organic solvent-tolerant lipase from Haloarcula sp. G41 and its application for biodiesel production. Folia Microbiol 59:455–463. https://doi.org/10.1007/s12223-014-0320-8

    Article  CAS  Google Scholar 

  29. Makhdoumi Kakhki A, Amoozegar MA, Mahmodi Khaledi E (2011) Diversity of hydrolytic enzymes in haloarchaeal strains isolated from salt lake. Int J Environ Sci Technol 8:705–714

    Article  Google Scholar 

  30. Maturrano L, Valens-vadell M, Rosello-Mora R, Anton J (2006) Salicola marasensis gen. nov., sp. nov., an extremely halophilic bacterium isolated from the Maras solar salterns in Peru. Int J Syst Evol Microbiol 56:1685–1691

    Article  CAS  Google Scholar 

  31. Mellado E, Ventosa A (2003) Biotechnological potential of moderately and extremely halophilic microorganisms. In: Barredo JL (ed) Microorganisms for health care, food and enzyme production. Research Signpost, Trivandrum, pp 233–256

    Google Scholar 

  32. Mezghani M, Alazard D, Karray F et al (2012) Halanaerobacter jeridensis sp. nov., isolated from a hypersaline lake. Int J Syst Evol Microbiol 62:1970–1973. https://doi.org/10.1099/ijs.0.036301-0

    Article  CAS  PubMed  Google Scholar 

  33. Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426–428. https://doi.org/10.1021/ac60147a030

    Article  CAS  Google Scholar 

  34. Moshfegh M, Shahverdi AR, Zarrini G, Faramarzi MA (2013) Biochemical characterization of an extracellular polyextremophilic α-amylase from the halophilic archaeon Halorubrum xinjiangense. Extremophiles 17:677–687. https://doi.org/10.1007/s00792-013-0551-7

    Article  CAS  PubMed  Google Scholar 

  35. Najjari A, Elshahed MS, Cherif A, Youssef NH (2015) Patterns and determinants of halophilic archaea (Class halobacteria) diversity in tunisian endorheic salt lakes and sebkhet systems. Appl Environ Microbiol 81:4432–4441. https://doi.org/10.1128/AEM.01097-15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Niku-Paavola ML, Karhunen E, Salola P, Raunio V (1988) Ligninolytic enzymes of the white-rot fungus Phlebia radiata. Biochem J 254:877–884

    Article  CAS  Google Scholar 

  37. Oren A (2002) Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol 28:56–63. https://doi.org/10.1038/sj/jim/7000176

    Article  CAS  PubMed  Google Scholar 

  38. Oren A (2010) Industrial and environmental applications of halophilic microorganisms. Environ Technol 31:825–834. https://doi.org/10.1080/09593330903370026

    Article  CAS  PubMed  Google Scholar 

  39. Ozcan B, Ozyilmaz G, Cihan A et al (2012) Phylogenetic analysis and characterization of lipolytic activity of halophilic archaeal isolates. Microbiology 81:186–194. https://doi.org/10.1134/S0026261712020105

    Article  CAS  Google Scholar 

  40. Ozcan B, Ozyilmaz G, Cokmus C, Caliskan M (2009) Characterization of extracellular esterase and lipase activities from five halophilic archaeal strains. J Ind Microbiol Biotechnol 36:105–110. https://doi.org/10.1007/s10295-008-0477-8

    Article  CAS  PubMed  Google Scholar 

  41. Park SH, Lee J, Lee HK (2000) Purification and characterization of chitinase from a marine, Vibrio sp. 98CJ11027. J Microbiol 38:224–229

    CAS  Google Scholar 

  42. Patil J, Bajekal S (2014) Characterization of xylanase and cellulase from extremely haloalkaliphilic archaeon Natrinema sp. SSBJUP-1 isolated from Lonar Lake. Int J Pharma Bio Sci 5:553–559

    CAS  Google Scholar 

  43. Pavel AB, Vasile CI (2012) PyElph—a software tool for gel images analysis and phylogenetics. BMC Bioinform 13:9. https://doi.org/10.1186/1471-2105-13-9

    Article  Google Scholar 

  44. Pérez-Pomares F, Bautista V, Ferrer J et al (2003) α-Amylase activity from the halophilic archaeon Haloferax mediterranei. Extremophiles 7:299–306. https://doi.org/10.1007/s00792-003-0327-6

    Article  CAS  PubMed  Google Scholar 

  45. Roh SW, Nam Y-D, Chang H-W et al (2009) Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food. Int J Syst Evol Microbiol 59:2359–2363. https://doi.org/10.1099/ijs.0.008243-0

    Article  CAS  PubMed  Google Scholar 

  46. Rohban R, Amoozegar MA, Ventosa A (2009) Screening and isolation of halophilic bacteria producing extracellular hydrolyses from Howz Soltan Lake, Iran. J Ind Microbiol Biotechnol 36:333–340. https://doi.org/10.1007/s10295-008-0500-0

    Article  CAS  PubMed  Google Scholar 

  47. Sánchez-Porro C, Martín S, Mellado E, Ventosa A (2003) Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes. J Appl Microbiol 94:295–300. https://doi.org/10.1046/j.1365-2672.2003.01834.x

    Article  PubMed  Google Scholar 

  48. Setati M (2010) Diversity and industrial potential of hydrolase producing halophilic/halotolerant eubacteria. Afr J Biotechnol 9:1555–1560. https://doi.org/10.5897/AJB10.051

    Article  CAS  Google Scholar 

  49. Soares MMCN, Da Silva R, Gomes E (1999) Screening of bacterial strains for pectinolytic activity: characterization of the polygalacturonase produced by Bacillus sp. Rev Microbiol 30:299–303

    Article  CAS  Google Scholar 

  50. Teather RM, Wood PJ (1982) Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43:777–780

    CAS  PubMed  PubMed Central  Google Scholar 

  51. Ventosa A, Nieto JJ, Oren A (1998) Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62:504–544

    CAS  PubMed  PubMed Central  Google Scholar 

  52. Ventosa A, Quesada E, Rodriguez-Valera F et al (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. Microbiology 128:1959–1968

    Article  Google Scholar 

  53. Wainø M, Ingvorsen K (2003) Production of b-xylanase and b-xylosidase by the extremely halophilic archaeon Halorhabdus utahensis. Extremophiles 7:87–93

    Article  Google Scholar 

  54. Wang Q, Li W, Liu Y et al (2007) Bacillus qingdaonensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a crude sea-salt sample collected near Qingdao in eastern China. Int J Syst Evol Microbiol 57:1143–1147. https://doi.org/10.1099/ijs.0.64668-0

    Article  CAS  PubMed  Google Scholar 

  55. Wejse PL, Ingvorsen K, Mortensen KK (2003) Purification and characterisation of two extremely halotolerant xylanases from a novel halophilic bacterium. Extremophiles 7:423–431. https://doi.org/10.1007/s00792-003-0342-7

    Article  CAS  PubMed  Google Scholar 

  56. Xu XW, Ren PG, Liu SJ et al (2005) Natrinema altunense sp. nov., an extremely halophilic archaeon isolated from a salt lake in Altun Mountain in **njiang, China. Int J Syst Evol Microbiol 55:1311–1314

    Article  CAS  Google Scholar 

Download references

Acknowledgements

MBA and NK were supported by the Tunisian Ministry of Higher Education, Scientific Research and Technology fellowship. This work was published with the support of AIRD (JEAI HALOBIOTECH project “Traitement anaérobie des effluents industriels salins et hypersalins par des bioréacteurs membranaires”).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Fatma Karray.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

This article does not contain any studies with human participants performed by any of the authors.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Karray, F., Ben Abdallah, M., Kallel, N. et al. Extracellular hydrolytic enzymes produced by halophilic bacteria and archaea isolated from hypersaline lake. Mol Biol Rep 45, 1297–1309 (2018). https://doi.org/10.1007/s11033-018-4286-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11033-018-4286-5

Keywords

Navigation