Abstract
Rhizosphere is a hot spot where specific kinds of diverse microbial communities develop under the influence of exudates from plant roots and in turn modulate growth and development of the plant. Such communities with or without interactions perform an array of functions, including nitrogen fixation, P, Zn, Si and K-solubilization, siderophore production, ammonification, hormones production, ACC deaminase production, ethylene production, anammox, comammox, nitrification, denitrification, antagonisms, induce resistance to plant, C-sequestration, volatile production, secondary metabolites production and many others that are known to modulate soil and plant health contributing to the corresponding responses to various stresses of biotic and abiotic nature. The magnitude of resilience of plant to biotic and abiotic stresses is completely dependent on types of communities and their interactions. With enhanced knowledge and understanding about rhizosphere, researchers are evaluating various approaches to engineer rhizosphere in such way that it enables plant to enhance the productivity and sustain it while maintaining soil health. This chapter highlights detailed account of microbial interactions in the rhizosphere with associated mechanisms that contribute to resilience of plants to stress for better growth and development.
All authors contributed in the preparation of manuscript. All authors have approved the final version of the manuscript.
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References
Abd-Allah EF (2001) Streptomyces plicatus as a model biocontrol agent. Folia Microbiol 46:309–314
AbdElgawad H, Zinta G, Hegab MM, Pandey R, Asard H, Abuelsoud W (2016) High salinity induces different oxidative stress and antioxidant responses in maizeseedlings organs. Front Plant Sci 7:276
Abramovitch RB, Martin GB (2004) Strategies used by bacterial pathogens to suppress plant defenses. Curr Opin Plant Biol 7:356–364
Agrios GN (2005) Plant pathology. Elsevier Academic, Amsterdam, p 635
Albert M (2013) Peptides as triggers of plant defence. J Exp Bot 64:5269–5279
Alvarez ME (2000) Salicylic acid in the machinery of hypersensitive cell death and disease resistance. Plant Mol Biol 44:429–442
Asghari S, Harighi B, Ashengroph M, Clement C, Aziz A, Esmaeel Q, Ait Barka E (2020) Induction of systemic resistance to Agrobacterium tumefaciens by endophytic bacteria in grapevine. Plant Pathol 69:827–837
Atkinson NJ, Urwin PE (2012) The interaction of plant biotic and abiotic stresses: from genes to the field. J Exp Bot 63:3523–3544
Avis TJ, Gravel V, Antoun H, Tweddell RJ (2008) Multifaceted beneficial effects of rhizosphere microorganisms on plant health and productivity. Soil Biol Biochem 40:1733–1740
Aziz M, Nadipalli RK, **e X, Sun Y, Surowiec K, Zhang JL, Paré PW (2016) Augmenting sulfur metabolism and herbivore defense in Arabidopsis by bacterial volatile signaling. Front Plant Sci 7:458. https://doi.org/10.3389/fpls.2016.00458
Backman PA, Sikora RA (2008) Endophytes: an emerging tool for biological control. Biol Control 46:1–3
Badri DV, Loyola-Vargas VM, Broeckling CD, De la Peña C, Jasinski M, Santelia D, Martinoia E, Sumner LW, Banta LM, Stermitz FR, Vivanco JM (2008) Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants. Plant Physiol 146:762–771
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere interactions with plants and other organisms. Ann Rev Plant Biol 57:233–266
Bakker PAHM, Berendsen RL, Doornbos RF, Wintermans PCA, Pieterse CMJ (2013) The rhizosphere revisited root microbiomics. Front Plant Sci 4:165. https://doi.org/10.3389/fpls.2013.00165
Beckman CH (2000) Phenolic – storing cells: keys to programmed cell death and periterdm formation in wilt disease resistance and in general defense response in plants? Physiol Mol Plant Pathol 57:101–110
Berg G (2009) Plante microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture. Appl Microbiol Biotechnol 84:11–18
Bilal S, Shahzad R, Imran M, Jan R, Kim KM, Lee IJ (2020) Synergistic association of endophytic fungi enhances Glycine max L. resilience to combined abiotic stresses: heavy metals, high temperature and drought stress. Ind Crop Prod 143:111–931
Block A, Toruño TY, Elowsky CG, Zhang C, Steinbrenner J, Beynon J, Alfano JR (2013) The Pseudomonas syringae type III effector HopD1 suppresses effector-triggered immunity, localizes to the endoplasmic reticulum, and targets the Arabidopsis transcription factor NTL9. New Phytol 201:1358–1370
Blount BA, Weenink T, Vasylechko S, Ellis T (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7:33279
Bokhari A et al (2019) Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance. Sci Rep 9:1–13
Boller T, Felix GA (2009) Renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol 60:379–406
Bouwmeester K, Govers F (2009) Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles. J Exp Bot 60:4383–4396
Bray EA, Bailey-Serres J, Weretilnyk E (2000) Responses to abiotic stresses. In: Gruissem W, Buchannan B, Jones R (eds) Biochemistry and molecular biology of plants. American Society of Plant Physiologists, Rockville, MD, pp 1158–1249
Buchholz K, Collins J (2013) The roots--a short history of industrial microbiology and biotechnology. Appl Microbiol Biotechnol 97:3747–3762
Cao L, Qiu Z, You J, Tan H, Zhou S (2005) Isolation and characterization of endophytic streptomycete antagonists of Fusarium wilt pathogen from surface-sterilized banana roots. FEMS Microbiol Lett 247:147–152
Čatská V, Smith SE, Read DJ (1997) Mycorrhizal Symbiosis, 2nd edn. Academic Press, San Diego; London
Chen C, Bauske EM, Musson G, Rodriguezkabana R, Kloepper JW (1995) Biological control of Fusarium wilt on cotton by use of endophytic bacteria. Biol Control 5:83–91
Chen M et al (2007) Expression of Bacillus subtilis proBA genes and reduction of feedback inhibition of proline synthesis increases proline production and confers osmotolerance in transgenic Arabidopsis. J Biochem Mol Biol 40:396–403
Chen H, Xue L, Chintamanani S, Germain H, Lin H, Cui H, Cai R, Zuo J, Tang X, Li X, Guo H (2009) Ethylene insensitive3 and ethylene insensitive3-like1 repress salicylic acid induction deficient2 expression to negatively regulate plant innate immunity in Arabidopsis. Plant Cell 21:2527–2540
Cheong SL, Cheow YL, Ting ASY (2017) Characterizing antagonistic activities and host compatibility (via simple endophyte-calli test) of endophytes as biocontrol agents of Ganoderma boninense. Biol Control 105:86–92
Chung JH, Song GC, Ryu CM (2016) Sweet scents from good bacteria: case studies on bacterial volatile compounds for plant growth and immunity. Plant Mol Biol 90:677–687
Colcombet J, Hirt H (2008) Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem J 413:217–226
Compant S, Reiter B, Sessitsch A, Nowak J, Clément C, Barka EA (2005) Endophytic colonization of Vitis vinifera L. by plant growth-promoting bacterium Burkholderia sp. strain PsJN. Appl Environ Microbiol 71:1685–1693
Conn VM, Walker AR, Franco CMM (2008) Endophytic Actinobacteria induces defense pathways in Arabidopsis thaliana. MPMI 21:208–218
Constantin ME, de Lamo FJ, Vlieger BV, Rep M, Takken FL (2019) Endophyte-mediated resistance in tomato to Fusarium oxysporum is independent of ET, JA, and SA. Front Plant Sci 10:979
Cui F, Wu S, Sun W, Coaker G, Kunkel B, He P, Shan L (2013) The Pseudomonas syringae type III effector AvrRpt2 promotes pathogen virulence via stimulating Arabidopsis auxin/indole acetic acid protein turnover. Plant Physiol 162:1018–1029
Danquah A, de Zelicourt A, Colcombet J, Hirt H (2014) The role of ABA and MAPK signaling pathways in plant abiotic stress responses. Biotechnol Adv 32:40–52
Dempsey DA, Vlot AC, Wildermuth MC, Klessig DF (2011) Salicylic acid biosynthesis and metabolism. Arabidopsis Book 9:0156
Ding T, Su B, Chen X, **e S, Gu S, Wang Q, Huang D, Jiang H (2017) An endophytic bacterial strain isolated from Eucommia ulmoides inhibits southern corn leaf blight. Front Plant Sci 8:903
Dixit R, Malaviya D, Pandiyan K, Singh UB, Sahu A, Shukla R, Singh BP, Rai JP, Sharma PK, Lade H, Paul D (2015) Bioremediation of heavy metals from soil and aquatic environment: an overview of principles and criteria of fundamental processes. Sustainability 7:2189–2212
Dixon RA, Achnine L, Kota P, Liu C-J, Reddy MS, Wang L (2002) The phenylpropanoid pathway and plant defence-a genomics perspective. Mol Plant Pathol 3:371–390
Dodds PN, Rafiqi M, Gan PHP, Hardham AR, Jones DA, Ellis JG (2009) Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistance. New Phytol 183:993–1000
Doyon Y, Choi VM, **a DF, Vo TD, Gregory PD, Holmes MC (2010) Transient cold shock enhances zinc-finger nuclease-mediated gene disruption. Nat Methods 7:459–460
Drzewiecka K, Borowiak K, Bandurska H, Golinski P (2012) Salicylic acid – a potential bio-marker of tobacco Bel-W3 cell death developed as a response to ground level ozone under ambient conditions. Acta Biol Hung 63:231–249
Dulermo T, Rascle C, Chinnici G, Gout E, Bligny R, Cotton P (2009) Dynamic carbon transfer during pathogenesis of sunflower by the necrotrophic fungus Botrytis cinerea: from plant hexoses to mannitol. New Phytol 183:1149–1162
Durrant WE, Dong X (2004) Systemic acquired resistance. Annu Rev Phytopathol 42:185–209
El-Tarabily KA, Nassar AH, Hardy G, Sivasithamparam K (2009) Plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber, by endophytic actinomycetes. J Appl Microbiol 107:672–681
Feng H, Li Y, Liu Q (2013) Endophytic bacterial communities in tomato plants with differential resistance to Ralstonia solanacearum. Afr J Microbiol Res 7:1311–1131
Fernandez O, Béthencourt L, Quero A, Sangwan RS, Clément C (2010) Trehalose and plant stress responses: friend or foe? Trends Plant Sci 15:409–417
Gahukar RT (2011) Food security in India: the challenge of food production and distribution. J Agr Food Inform 12:270–286
Geelen D, Leyman B, Batoko H, Di Sansebastiano GP, Moore I, Blatt MR (2002) The abscisic acid-related SNARE homolog NtSyr1 contributes to secretion and growth: evidence from competition with its cytosolic domain. Plant Cell 14:963
Genre A, Ortu G, Bertoldo C, Martino E, Bonfante P (2009) Biotic and abiotic stimulation of root epidermal cells reveals common and specific responses to arbuscular mycorrhizal fungi. Plant Physiol 149:1424–1434
Glazebrook J (2005) Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Ann Rev Phytopathol 43(1):205–227
Glick BR, Cheng Z, Czarny J, Duan J (2007) Promotion of plant growth by ACC deaminase-producingsoil bacteria. Eur J Plant Pathol 119:329–339
Govindasamy V, George P, Kumar M, Aher L, Raina SK, Rane J, Annapurna K, Minhas PS (2020) Multi-trait PGP rhizobacterial endophytes alleviate drought stress in a senescent genotype of sorghum [Sorghum bicolor (L.) Moench]. 3 Biotech 10:13
Gow NA (1999) Signals and interactions between phytopathogenic zoospores and plant roots. In: “Microbial signaling and communication” 57th symposium of the society for general microbiology. Cambridge University Press, pp 285–305
Grant SR, Fisher EJ, Chang JH, Mole BM, Dangl JL (2006) Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria. Ann. Rev. Microbiol. 60:425–449
Gudesblat GE, Torres PS, Vojnov AA (2009) Xanthomonas campestris overcomes Arabidopsis stomatal innate immunity through a DSF cell-to-cell signal-regulated virulence factor. Plant Physiol 149:1017–1027
Hammerschmidt R (1999) Phytoalexins: what have we learned after 60 years? Annu Rev Phytopathol 37:285–306
Hammerschmidt R (2003) Phytoalexin accumulation: response or defense. Physiol Mol Plant Pathol 62:125–126
Hammerschmidt R, Metraux J-P, van Loon LC (2001) Inducing resistance: a summary of papers presented at the First International Symposium on InducedResistance to Plant Diseases, Corfu, May 2000. Eur J Plant Pathol 107:1–6
Harborne JB (1989) In: Dey PM, Harborne JB (eds) Methods in plant biochemistry, Vol. 1: Plant phenolics. Academic Press, London
Harborne JB (1999) The comparative biochemistry of phytoalexin induction in plants. Biochem Syst Ecol 27:335–376
Harman GE (2011) Multifunctional fungal plant symbionts: new tools to enhance plant growth and productivity. New Phytol 189:647–649
Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma species-opportunistic, avirulent plant symbionts. Nat Rev Microbiol 2:43–56
Hassan S, Mathesius U (2012) The role of flavonoids in root–rhizosphere signalling: opportunities and challenges for improving plant–microbe interactions. J Exp Bot 63:3429–3444
Heidel AJ, Clarke JD, Antonovics J, Dong X (2004) Fitness costs of mutations affecting the systemic acquired resistance pathway in Arabidopsis thaliana. Genetics 168:2197–2206
Heil M, Hilpert A, Kaiser W, Linsenmair KE (2000) Reduced growth and seed set following chemical induction of pathogen defence: does systemic acquired resistance (SAR) incur allocation costs? J Ecol 88:645–654
Humphrey TV, Bonetta DT, Goring DR (2007) Sentinels at the wall: cell wall receptors and sensors. New Phytol 176:7–21
Jiang C, Zu C, Lu D, Zheng Q, Shen J, Wang Hand Li D (2017) Effect of exogenous selenium supply on photosynthesis, Na+ accumulation and antioxidative capacity of maize (Zea mays L.) under salinity stress. Sci Rep 7:42039
Jo Y-K, Kim BH, Jung G (2009) Antifungal activity of silver ions and nanoparticles on phytopathogenic fungi. Plant Dis 93:1037–1043
Kandel SL, Firrincieli A, Joubert PM, Okubara PA, Leston ND, McGeorge KM, Mugnozza GS, Harfouche A, Kim SH, Doty SL (2017) An in vitro study of bio-control and plant growth promotion potential of Salicaceae endophytes. Front Microbiol 8:386
Kasprowicz MJ, Kozioł M, Gorczyca A (2010) The effect of silver nanoparticles on phytopathogenic spores of Fusarium culmorum. Can J Microbiol 56:247–253
Katagiri Y, Hashidoko Y, Tahara S (2002) Localization of flavonoids in the yellow lupin seedlings and their UV-B-absorbing potential. Z Naturforsch 57:811–816
Kim H, Lee YH (2020) The rice microbiome: a model platform for crop holobiome. Phytobiomes J 4:5–18
Kloepper JW, Ryu CM (2006) Bacterial Endophytes as elicitors of induced systemic resistance. In: Schulz BJE et al (eds) Microbial root Endophytes, vol 9. Springer-Verlag, pp 33–52
Kunihiro S, Hiramatsu T, Kawano T (2011) Involvement of salicylic acid signal transduction in aluminum-responsive oxidative burst in Arabidopsis thaliana cell suspension culture. Plant Signal Behav 6:611–616
Kunkel BN, Brooks DM (2002) Cross talk between signaling pathways in pathogen defense. Curr Opin Plant Biol 5:325–331
Lamb C, Dixon RA (1997) The oxidative burst in plant disease resistance. Ann Rev Plant Physiol Plant Mol Biol 48:251–275
Lamsal K, Kim SW, **Hee Jung JH, Kim YS, Kim KS, Lee YS (2011) Inhibition effects of silver nanoparticles against powdery mildews on cucumber and pumpkin. Mycobiology 39:26–32
Leach JE, Triplett LR, Argueso CT, Trivedi P (2017) Communication in the phytobiome. Cell 169(4):587–596
Lehtonen MT, Akita M, Kalkkinen N, Ahola-Iivarinen E, Ro Ronnholm G, Somervuo P, Thelander M, Valkonen JPT (2009) Quickly-released peroxidase of moss in defense against fungal invaders. New Phytol 183:432–443
Lipka V, Kwon C, Panstruga R (2007) SNARE-ware: the role of SNARE-domain proteins in plant biology. Annu Rev Cell Dev Biol 23:147–174
Liu X, Zhao H, Chen S (2006) Colonization of maize and rice plants by strain Bacillus megaterium C4. Curr Microbiol 52:186–190
Liu N, You J, Shi W, Liu W, Yang Z (2012) Salicylic acid involved in the process of aluminum induced citrate exudation in Glycine max L. Plant Soil 352:85–97
Liu H, Brettel LE, Qiu Z, Singh BK (2020) Microbiome-mediated stress resistance in plants. Trends Plant Sci 25:733–743
Lorenzo O, Solano R (2005) Molecular players regulating the jasmonate signalling network. Curr Opin Plant Biol 8:532–540
Lovley DR (2012) Electromicrobiology. Ann Rev Microbiol 66:391–409
Lowery CA, Dickerson TJ, Janda KD (2008) Interspecies and interkingdom communication mediated by bacterial quorum sensing. Chem Soc Rev 37:1337–1346
Lowery CA, Abe T, Park J, Eubanks LM, Sawada D, Kaufmann GF, Janda KD (2009) Revisiting AI-2 quorum sensing inhibitors: direct comparison of alkyl-DPD analogues and a natural product fimbrolide. J Am Chem Soc 131:15584–15585
Loyola-Vargas VM, Broeckling CD, Dayakar BV, Vivanco JM (2007) Effect of transporters on the secretion of phytochemicals by the roots of Arabidopsis thaliana. Planta 225:301–310
Lunn JE, Delorge I, Figueroa CM, Van Dijck P, Stitt M (2014) Trehalose metabolism in plants. Plant J 79:544–567
Mahmood A, Turgay OC, Farooq M, Hayat R (2016) Seed biopriming with plant growth promoting rhizobacteria: a review. FEMS Microbiol Ecol 92:1–14
Maleck K, Lawton K (1998) Plant strategies for resistance to pathogens. Curr Opin Biotech 9:208–213
Malinowski DP, Alloush GA, Belesky DP (2000) Leaf endophyte Neotyphodium coenophialum modifies mineral uptake in tall fescue. Plant Soil 227:115–126
Malviya D, Sahu PK, Singh UB, Paul S, Gupta A, Gupta AR, Singh S, Kumar M, Paul D, Rai JP, Singh HV, Brahmaprakash GP (2020) Lesson from ecotoxicity: revisiting the microbial lipopeptides for the management of emerging diseases for crop protection. Int J Env Res Pub He 17:1434
Mauch-Mani B, Metraux JP (1998) Salicyclic acid and systemic acquired resistance to pathogen attack. Ann Bot 82:535–540
Meena KK, Sorty AM, Bitla UM, Choudhary K, Gupta PK, Pareek A, Singh DP, Prabha R, Gupta VK, Singh HB, Krishanani KK, Minhas PS (2017) Abiotic stress responses and microbe-mediated mitigation in plants: the Omics strategies. Fron Plant Sci 8:1–25
Melotto M, Underwood W, Koczan J, Nomura K, He SY (2006) Plant stomata function in innate immunity against bacterial invasion. Cell 126:969–980
Mishra S, Singh BR, Singh A, Keswani C, Naqvi AH et al (2014) Biofabricated silver nanoparticles act as a strong fungicide against Bipolaris sorokiniana causing spot blotch disease in wheat. PLoS One 9:97881
Morrissey JP, Osbourn AE (1999) Fungal resistance to plant antibiotics as a mechanism of pathogenesis. Microbiol Mol Biol Rev 63(3):708–24
Murphy JF, Reddy MS, Ryu C-M, Kloepper JW, Li R (2003) Rhizobacteria-mediated growth promotion of tomato leads to protection against Cucumber mosaic virus. Phytopathology 93:1301–1307
Muthamilarasan M, Prasad M (2013) Plant innate immunity: an updated insight into defense mechanism. J Biosci 38:433–449
Newman M-A, Sundelin T, Nielsen JT, Erbs G (2013) MAMP (microbe-associated molecular pattern) triggered immunity in plants. Front Plant Sci 4:139
Nguema-Ona E, Bannigan A, Chevalier L, Baskin TI, Driouich A (2007) Disruption of arabinogalactan proteins disorganizes cortical microtubules in the root of Arabidopsis thaliana. Plant J 52:240–251
Nguema-Ona E, Coimbra S, Vicré-Gibouin M, Mollet JC, Driouich A (2012) Arabinogalactan proteins in root and pollen-tube cells: distribution and functional aspects. Ann Bot 110:383–404
Nguema-Ona E, Vicré-Gibouin M, Cannesan MA, Driouich A (2013) Arabinogalactan proteins in root-microbe interactions. Trends Plant Sci 18:440–449
Nicholson R, Hammerschmidt R (1992) Phenolic compounds and their role in disease resistance. Annu Rev Phytopathol 30:369–389
Nimnoi P, Pongsilp N, Lumyong S (2010) Endophytic actinomycetes isolated from Aquilaria crassna Pierre ex Lec and screening of plant growth promoters production. World J Microb Biot 26:193–203
Nühse TS (2012) Cell wall integrity signaling and innate immunity in plants. Front Plant Sci 3:280
Nürnberger T, Lipka V (2005) Non-host resistance in plants: new insights into an old phenomenon. Mol Plant Pathol 6:335–345
Osbourn AE (1996) Preformed antimicrobial compounds and plant defense against fungal attack. Plant Cell 8:1821–1831
Paret ML, Palmateer AJ, Knox GW (2013) Evaluation of a light-activated nanoparticle formulation of titanium dioxide with zinc for management of bacterial leaf spot on Rosa. Noare. Hort Sci 48:189–192
Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23:80–92
Ratnayake M, Leonard RT, Menge JA (1978) Root exudation in relation to supply of phosphorus and its possible relevance to mycorrhiza formation. New Phytol 81:543–552
Rhodius VA, Mutalik VK, Gross CA (2012) Predicting the strength of UP-elements and full-length E.colis igmaE promoters. Nucleic Acids Res 40:2907–2924
Rodriguez R, Durán P (2020) Natural holobiome engineering by using native extreme microbiome to counteract the climate change effects. Front Bioeng Biotech 8:568
Rojo E, Solano R, Sanchez-Serrano JJ (2003) Interactions between signaling compounds involved in plant defense. J Plant Growth Regul 22:82–98
Rowley-Conwy P, Layton R (2011) Foraging and farming as niche construction: stable and unstable adaptations. Philos Trans R Soc Lond Ser B Biol Sci 366:849–862
Ryan CA (2000) The system in signaling pathway: differential activation of plant defensive genes. Biochim Biophys Acta 1477:112–121
Sahu PK, Brahmaprakash GP (2018) Modified liquid dual culture methodology for screening bacterial endophytes against fungal pathogens. Mysore J Agric Sci 52:234–240
Sahu PK, Sharma L, Gupta L, Renu (2016) Rhizospheric and endophytic beneficial microorganisms: treasure for biological control of plant pathogens. In: Santra S, Mallick A (eds) Recent biotechnological applications in India. ENVIS Centre on Environmental Biotechnology, University of Kalyani, Nadia, pp 50–63
Sahu PK, Gupta A, Kedarnath KP, Lavanya G, Yadav AK (2017a) Attempts for biological control of Ralstonia solanacearum by using beneficial microorganisms. In: Meena V, Mishra P, Bisht J, Pattanayak A (eds) Agriculturally important microbes for sustainable agriculture. Springer, Singapore, pp 315–342
Sahu PK, Gupta A, Lavanya G, Bakade R, Singh DP (2017b) Bacterial endophytes: potential candidates for plant growth promotion. In: Singh D, Singh H, Prabha R (eds) Plant-microbe interactions in agro-ecological perspectives. Springer, Singapore, pp 612–632. https://doi.org/10.1007/978-981-10-5813-4_31
Sahu PK, Shivaprakash MK, Mallesha BC, Subbarayappa CT, Brahmaprakash GP (2018) Effect of bacterial endophytes Lysinibacillus sp. on plant growth and fruit yield of tomato (Solanum lycopersicum). Int J Curr Microbiol App Sci 7:3399–3408
Sahu PK, Singh S, Gupta A, Singh UB, Brahmaprakash GP, Saxena AK (2019a) Antagonistic potential of bacterial endophytes and induction of systemic resistance against collar rot pathogen Sclerotium rolfsii in tomato. Biol Control 137:104014
Sahu PK, Singh DP, Prabha R, Meena KK, Abhilash PC (2019b) Connecting microbial capabilities with the soil and plant health: options for agricultural sustainability. Ecol Indic 105:601–612
Sahu PK, Singh S, Gupta AR, Gupta A, Singh UB, Manzar N, Bhowmik A, Singh HV, Saxena AK (2020a) Endophytic bacilli from medicinal-aromatic perennial holy basil (Ocimum tenuiflorum L.) modulate plant growth promotion and induced systemic resistance against Rhizoctonia solani in rice (Oryza sativa L.). Biol Control 150:104353
Sahu PK, Thomas P, Singh S, Gupta A (2020b) Taxonomic and functional diversity of cultivable endophytes with respect to the fitness of cultivars against Ralstonia solanacearum. J Plant Dis Protect:1–10
Sarma BK, Yadav SK, Singh S, Singh HB (2015) Microbial consortium-mediated plant defense against phytopathogens: readdressing for enhancing efficacy. Soil Biol Biochem 87:25–33
Schulz B, Boyle C (2006) What are endophytes? In: BJE S, CJC B, Sieber TN (eds) Microbial root endophytes. Springer-Verlag, Berlin, pp 1–13
Schulz B, Boyle C, Draeger S, Rommert AK, Krohn K (2002) Endophytic fungi: a source of novel biologically active secondary metabolites. Mycol Res 109:996–1004
Shi Y, Sun H, Wang X, ** W, Chen Q, Yuan Z, Yu H (2019) Physiological and transcriptomic analyses reveal the molecular networks of responses induced by exogenous trehalose in plant. PLoS One 14:e0217204
Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58:221–227
Shoda M (2000) Bacterial control of plant diseases. J Biosci Bioeng 89:515–521
Shoresh M, Harman GE, Mastouri F (2010) Induced systemic resistance and plant responses to fungal biocontrol agents. Annu Rev Phytopathol 48:21–43
Singh BK, Millard P, Whiteley AS, Murrell JC (2004) Unravelling rhizosphere-microbial interactions: opportunities and limitations. Trends Microbiol 12:386–393
Singh UB, Sahu A, Sahu N, Singh BP, Singh RK, Singh DP, Jaiswal RK, Sarma BK, Singh HB, Manna MC, Rao AS (2013) Can endophytic Arthrobotrys oligospora modulate accumulation of defence related biomolecules and induced systemic resistance in tomato (Lycopersicon esculentum mill.) against root knot disease caused by Meloidogyne incognita ?. Appl Soil Ecol 63:45–56
Singh UB, Malviya D, Khan W, Singh S, Karthikeyan N, Imran M, Rai JP, Sarma BK, Manna MC, Chaurasia R, Sharma AK, Paul D and Oh J-W (2018) Earthworm grazed-Trichoderma harzianum biofortified spent mushroom substrates modulate accumulation of natural antioxidants and bio-fortification of mineralnutrients in tomato. Front Plant Sci 9:1017
Singh UB, Malviya D, Singh S, Imran M, Pathak N, Alam M, Rai JP, Singh RK, Sarma BK, Sharma PK, Sharma AK (2016a) Compatible salt-tolerant rhizosphere microbe-mediated induction of phenylpropanoid cascade and induced systemic responses against Bipolaris sorokiniana (Sacc.) shoemaker causing spot blotch disease in wheat (Triticum aestivum L.). Appl Soil Ecol 108:300–306
Singh UB, Malviya D, Singh S, Pradhan JK, Singh BP, Roy M, Imram M, Pathak N, Baisyal BM, Rai JP, Sarma BK (2016b) Bio-protective microbial agents from rhizosphere eco-systems triggering plant defense responses provide protection against sheath blight disease in rice (Oryza sativa L.). Microbiol Res 192:300–312
Singh UB, Malviya D, Singh S, Kumar M, Sahu PK, Singh HV, Kumar S, Roy M, Imran M, Rai JP, Sharma AK (2019a) Trichoderma harzianum-and methyl jasmonate-induced resistance to Bipolaris sorokiniana through enhanced phenylpropanoid activities in bread wheat (Triticum aestivum L.). Front Microbiol 10:1697
Singh UB, Singh S, Khan W, Malviya D, Sahu PK, Chaurasia R, Sharma SK, Saxena AK (2019b) Drechslerella dactyloides and Dactylaria brochopaga mediated induction of defense related mediator molecules in tomato plants pre-challenged with Meloidogyne incognita. Indian Phytopathol 72:309–320
Singh UB, Singh S, Malviya D, Karthikeyan N, Imran M, Chaurasia R, Alam M, Singh P, Sarma BK, Rai JP, Damodaran T (2019c) Integration of anti-penetrant tricyclazole, signaling molecule salicylic acid and root associated Pseudomonas fluorescens enhances suppression of Bipolaris sorokiniana in bread wheat (Triticum aestivum L.). J Plant Pathol 101:943–954.
Singh UB, Singh S, Malviya D, Chaurasia R, Sahu PK, Sharma SK, Saxena AK (2020a) Drechslerella dactyloides and Dactylaria brochopaga mediated structural defense in tomato plants pre-challenged with Meloidogyne incognita. Biol Control 143:104202
Singh S, Singh UB, Trivedi M, Sahu PK, Paul S, Paul D, Saxena AK (2020b) Seed biopriming with salt-tolerant endophytic Pseudomonas geniculata-modulated biochemical responses provide ecological fitness in maize (Zea mays L.) grown in saline sodic soil. Int J Env Res Pub He 17:253.
Singh S, Singh UB, Malviya D, Paul S, Sahu PK, Trivedi M, Paul D, Saxena AK (2020c) Seed biopriming with microbial inoculant triggers local and systemic defense responses against Rhizoctonia solani causing banded leaf and sheath blight in maize (Zea mays L.). Int J Env Res Pub He 17:1396
Singh DP, Singh V, Shukla R, Sahu P, Prabha R, Gupta A, Sarma BK, Gupta VK (2020d) Stage-dependent concomitant microbial fortification improves soil nutrient status, plant growth, antioxidative defense system and gene expression in rice. Microbiol Res 126538
Sirvent T, Gibson D (2002) Induction of hypericins and hyperforin in Hypericum perforatum L. in response to biotic and chemical elicitors. Physiol Mol Plant Pathol 60:311–320
Smékalová V, Doskočilová A, Komis G, Šamaj J (2014) Crosstalk between secondary messengers, hormones and MAPK modules during abiotic stress signalling in plants. Biotechnol Adv 32:2–11
Smith SE, Read DJ (1997) Mycorrhizal Symbiosis (Second Edition). Academic Press. pp 605
Sticher L, Mauch-Mani B, Metraux JP (1997) Systemic acquired resistance. Annu Rev Phytopathol 35:235–270
Suárez J (2020) The stability of traits conception of the hologenome: an evolutionary account of holobiont individuality. Hist Phil Life Sci 42:1–27
Sullivan TJ, Rodstrom J, Vandop J, Librizzi J, Graham C, Schardl CL, Bultman TL (2007) Symbiont-mediated changes in Lolium arundinaceum inducible defenses: evidence from changes in gene expression and leaf composition expression and leaf composition. New Phytol 176:673–679
Sun X, Wang P, Jia X, Huo L, Che R, Ma F (2018) Improvement of drought tolerance by overexpressing MdATG18a is mediated by modified antioxidant systemand activated autophagy in transgenic apple. Plant Biotechnol J 16(2):545–57
Tan HM, Cao LX, He ZF, Su GJ, Lin B, Zhou SN (2006) Isolation of endophytic actinomycetes from different cultivars of tomato and their activities against Ralstonia solanacearumin Vitro. World J Microb Biot 22:1275–1280
Thomma BP, Penninckx IA, Broekaert WF, Cammue BP (2001) The complexity of disease signaling in Arabidopsis. Curr Opin Immunol 13:63–68
Thomma BP, Nurnberger T, Joosten MH (2011) Of PAMPs and effectors: the blurred PTI-ETI dichotomy. Plant Cell 23:4–15
Ting ASY, Mah SW, Tee CS (2010) Identification of volatile metabolites from fungal endophytes with biocontrol potential towards Fusarium oxysporum F. sp. cubense race 4. Am J Agric Biol Sci 5:177–182
Tripathi S, Kamal S, Sheramati I, Oelmuller R, Varma A (2008) Mycorrhizal fungi and other root endophytes as biocontrol agents against root pathogens. In: Mycorrhiza. Springer, Berlin Heidelberg, pp 281–306
Turner JG, Ellis C, Devoto A (2002) The jasmonate signal pathway. Plant Cell 4:S153–S164
Uren NC (2000) Types, amounts, and possible functions of compounds released into the rhizosphere by soil-grown plants. In: Pinto R, Varanini Z, Nannipieri P (eds) The rhizosphere: biochemistry and organic substances at the soil-plant interface. Marcel Dekker, New York, pp 19–40
Van Loon LC (1997) Induced resistance and the role of pathogenesis-related proteins. Eur J Plant Pathol 103:753–765
Van Loon LC (2007) Plant responses to plant growth-promoting rhizobacteria. Eur J Plant Pathol 119:243–254
Van Loon LC, Geraats BP, Linthorst HJ (2006) Ethylene as a modulator of disease resistance in plants. Trends Plant Sci 11:184–191
Van West P, Appiah AA, Gow NA (2003) Advances in research on oomycete root pathogens. Physiol Mol Plant Pathol 62:99–113
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74
Vlot AC, Dempsey DA, Klessig DF (2009) Salicylic acid, a multifaceted hormone to combat disease. Annu Rev Phytopathol 47:177–206
Vlot AC, Klessig DF, Park SW (2008) Systemic acquired resistance: the elusive signal(s). Curr Opin Plant Biol 11:436–442
Wang X, Liang G (2014) Control efficacy of an endophytic Bacillus amyloliquefaciens strain BZ6-1 against peanut bacterial wilt, Ralstonia solanacearum. BioMed Res Int 12:2014
Wang S et al (2020) Exploring soil factors determining composition and structure of the bacterial communities in saline-alkali soils of Songnen plain. Front Microbiol 10:2902
Wani AH, Shah MA (2012) A unique and profound effect of MgO and ZnO nanoparticles on some plant pathogenic fungi. J Appl Pharma Sci 2:40–44
Waqas M, Khan AL, Kamran M, Hamayun M, Kang SM, Kim YH, Lee IJ (2012) Endophytic fungi produce gibberellins and indoleacetic acid and promotes host-plant growth during stress. Molecules (Basel, Switzerland) 17(9):10754–10773
Wei G, Kloepper JW, TuZun S (1991) Induction of systemic resistance of cucumber to Colletotrichum orbiculare by select strains of plant growth promoting rhizobacteria. Phytopathology 81:1508–1512
Weidenbörner M, Hindorf H, Jha HC, Tsotsonos P (1990) Antifungal activity of flavonoids against storage fungi of the genus Aspergillus. Phytochemistry 29:1103–1105
Wink M (1997) Compartmentation of secondary metabolites and xenobiotics in plant vacuoles. Adv Bot Res 25:141–169
Winkel Shirley B (2002) Biosynthesis of flavonoids and effects of stress. Curr Opin Plant Biol 5:218–223
Wirthmueller L, Maqbool A, Banfield MJ (2013) On the front line: structural insights into plant-pathogen interactions. Nat Rev Microbiol 11:761–776
Xu P et al (2020) Integration of Jasmonic acid and ethylene in to auxin signaling in root development. Front Plant Sci 11:271. https://doi.org/10.3389/fpls.2020.00271
Yamaguchi T, Blumwald E (2005) Develo** salt-tolerant crop plants: challenges and opportunities. Trends Plant Sci 10:615–620
Yi HS, Ahn YR, Song GC, Ghim SY, Lee S, Lee G, Ryu CM (2016) Impact of a bacterial volatile 2, 3-Butanediol on Bacillus subtilis Rhizosphere robustness. Front Microbiol 7:993
Young LS et al (2013) Endophytic establishment of the soil isolate Burkholderia sp. CC-Al74enhances growth and P-utilization rate in maize (Zea mays L.). Appl Soil Ecol 66:40–47
Yu X, Zhang W, Lang D, Zhang X, Cui G, Zhang X (2019) Interactions between endophytes and plants: beneficial effect of endophytes to ameliorate biotic and abiotic stresses in plants. J Plant Boil 62:1–13
Yue Z, Shen Y, Chen Y, Liang A, Chu C, Chen C, Sun Z (2019) Microbiological insights into the stress-alleviating property of an endophytic Bacillus altitudinis WR10 in wheat under low-phosphorus and high-salinity stresses. Microorganisms 7:508
Zahra N, Mahmood S, Raza ZA (2018) Salinity stress on various physiological and biochemical attributes of two distinct maize (Zea mays L.) genotypes. J Plant Nutr 41:1368–1380
Zehnder GW, Murphy JF, Sikora EJ, Kloepper JW (2001) Application of rhizobacteria for induced resistance. Eur J Plant Pathol 107:39–50
de Zelicourt A, Colcombet J, Hirt H (2016) The role of MAPK modules and ABA during abiotic stress signaling. Trends Plant Sci 21:677–685
Zhang S, Reddy MS, Kloepper JW (2004) Tobacco growth enhancement and blue mold disease protection by rhizobacteria: relationship between plant growth promotion and systemic disease protection by PGPR strain 90–166. Plant Soil 262:277–288
Zhang H et al (2018) The role of promoter-associated histone acetylation of Haem Oxygenase-1 (HO-1) and Giberellic Acid-Stimulated Like-1 (GSL-1) genes in heat-induced lateral root primordium inhibition in maize. Front Plant Sci 9:1520
Zhao K, Penttinen P, Guan T, **ao J, Chen Q, Xu J, Lindström K, Zhang L, Zhang X, Strobel GA (2011) The diversity and anti-microbial activity of endophytic actinomycetes isolated from medicinal plants in Panxi plateau, China. Curr Microbiol 62:182–190
Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53:247–273
Zhu JK et al. (2003) ICE1, a regulator of cold induced transcriptome and freezing tolerance in plants. US Patent App. 10(425):913
Zhu Q et al (2019) A MAPK cascade downstream of IDA–HAE/HSL2 ligand–receptor pair in lateral root emergence. Nat Plants 5:414–423
Zimmermann R, Sakai H, Hochholdinger F (2010) The gibberellic acid stimulated-like gene family in maize and its role in lateral root development. Plant Physiol 152:356–365
Zong XJ et al (2009) Abscisic acid and hydrogen peroxide induce a novel maize group C MAP kinase gene, ZmMPK7, which is responsible for the removal of reactive oxygen species. Planta 229:485–495
Acknowledgements
We would like to express our special thanks to Dr. Ruchita Dixit and Wasiullah for technical assistance in collecting literatures. The authors wish to thanks Dr. Anil K. Saxena, Director, ICAR-NBAIM, Kushmaur, Maunath Bhanjan, India, for providing technical support during preparation of manuscript. Our special thanks go to Application of Microorganisms in Agriculture and Allied Sectors (AMAAS), ICAR-NBAIM, Kushmaur and Indian Council of Agricultural Research, Government of India, for providing financial support to Udai B. Singh to carry out the research work.
Declaration of Competing Interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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Malviya, D. et al. (2020). Microbial Interactions in the Rhizosphere Contributing Crop Resilience to Biotic and Abiotic Stresses. In: Sharma, S.K., Singh, U.B., Sahu, P.K., Singh, H.V., Sharma, P.K. (eds) Rhizosphere Microbes. Microorganisms for Sustainability, vol 23. Springer, Singapore. https://doi.org/10.1007/978-981-15-9154-9_1
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