Jean Gayon, History and Philosophy of Biology: A New Synthesis

  • Chapter
  • First Online:
Philosophy, History and Biology: Essays in Honour of Jean Gayon

Part of the book series: History, Philosophy and Theory of the Life Sciences ((HPTL,volume 30))

  • 157 Accesses

Abstract

In this contribution, I show that Jean Gayon’s work operates an original synthesis between the history of science, the philosophy of science and the life sciences. I propose that the philosophy of biology as it has been constructed since the 1970s could usefully draw inspiration from this synthesis to develop a much richer and more open analysis of current biological sciences. While the philosophy of biology is very strongly dominated by the biology of evolution, the history of biology has opened up to practically all the major fields of contemporary biology (for example, cell biology, molecular biology, or virology, among many others). Perhaps Jean Gayon’s work is an invitation to draw inspiration from this thematic diversity to construct a new philosophy of biology and, beyond that, a new synthesis between philosophy, history, and biology.

Translated from Pradeu (2018).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
EUR 29.95
Price includes VAT (Spain)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
EUR 96.29
Price includes VAT (Spain)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
EUR 124.79
Price includes VAT (Spain)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info
Hardcover Book
EUR 124.79
Price includes VAT (Spain)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    Among the other journals that publish work in the philosophy of biology, some are devoted to both historical and philosophical approaches to the life sciences (Studies in History and Philosophy of Biological and Biomedical Sciences, for example), while others publish research that is relevant to the philosophy of science as a whole (Philosophy of Science or The British Journal for the Philosophy of Science, for example).

  2. 2.

    At this point, I would like to mention two potential conflicts, which may distort my judgment. First, I have been Associate Editor of the journal Biology and Philosophy since January 2017 (the mission of the Editor-in-Chief and Associate Editors is to receive submissions, select reviewers according to a “double-blind” procedure, and make the final decision whether to publish the submitted article). There is therefore perhaps a risk that I overestimate the importance of the journal Biology and Philosophy relative to other journals. Second, my own research in philosophy of biology has focused on the philosophy of immunology, a field that is not primarily evolutionary. There is therefore perhaps a risk that I overestimate the importance of non-evolutionary approaches in the philosophy of biology.

  3. 3.

    The Proceedings of the National Academy of Sciences of the United States of America (PNAS) is the official journal of the National Academy of Sciences of the United States, published since 1915.

  4. 4.

    More specifically, I have used the PNAS thematic classification, which I have applied to articles published in Biology and Philosophy. This was the best way for me to produce a satisfactory comparison between the two journals. An obvious consequence of this method is the multiplication of “0%” mentions in the representation of biological fields as it appears in Biology and Philosophy (Fig. 5.1).

  5. 5.

    In a fascinating study, Christophe Malaterre and his colleagues have enriched and challenged Jean Gayon’s and my conclusions. Using a different and increasingly popular method, namely text mining, they conclude that although evolution by natural selection has been a much prevalent and relatively stable topic in Biology and Philosophy, a much broader diversity of topics has in fact been addressed in this journal (Malaterre et al., 2020).

  6. 6.

    In my 2017 article, I examine and reject several often-advanced explanations for the dominance of evolutionary biology in philosophy of biology, namely the idea of a simple historical contingency, that of a higher degree of theorization in evolutionary biology, and finally that of a greater intrinsic philosophical interest in evolution. I refer the interested reader to this article.

  7. 7.

    The Journal of the History of Biology was founded by Everett Mendelsohn in 1968. Mendelsohn was Editor-in-chief for thirty-one years, until 1999. Until December 2017, the Editor-in-Chief was Michael Dietrich (Dartmouth College, then Pittsburgh University); since January 2018, the Editors-in-Chief are Karen Rader (Virginia Commonwealth University) and Marsha Richmond (Wayne State University). The Journal of the History of Biology is unanimously considered to be one of the major journals, if not the major journal, in the history of biology.

  8. 8.

    The most notable exception is the work of Gregory J. Morgan (Morgan 2001, 2006, 2010; Morgan and Pitts 2008).

  9. 9.

    In 2016, John Dupré, Gladys Kostyrka, and I edited what is, to our knowledge, the first edited volume devoted specifically to the philosophy of virology (Pradeu et al., 2016). It includes the contributions of Gregory J. Morgan (Stevens Institute of Technology), Maureen O’Malley (then at the University of Bordeaux), Thomas Pradeu (CNRS & University of Bordeaux), Jean-Michel Claverie and Chantal Abergel (Université Aix-Marseille), Patrick Forterre (Institut Pasteur & Paris-Sud University), John Dupré and Stephan Guttinger (University of Exeter), Marc van Regenmortel (CNRS & University of Strasbourg), Eugene Koonin (NIH) et Petro Starokadomskyy (UT Southwestern Medical Center), Gladys Kostyrka (IHPST, CNRS & Paris 1 Panthéon-Sorbonne University), and Pierre-Olivier Méthot (Laval University).

  10. 10.

    On Morange, see Loison and Pradeu (2021).

References

  • Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., et al. (2007). CRISPR provides acquired resistance against viruses in prokaryotes. Science, 315(5819), 1709–1712.

    Article  Google Scholar 

  • Barrangou, R., & Marraffini, L. A. (2014). CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity. Molecular Cell, 54(2), 234–244.

    Article  Google Scholar 

  • Baxter, J. (2019). CRISPR-Cas changing biology? Biology & Philosophy, 34, 15–15.

    Article  Google Scholar 

  • Bitbol, M., & Gayon, J. (Eds.). (2006). L’épistémologie française, 1830–1970 (1re éd.). Presses Universitaires de France.

    Google Scholar 

  • Bondy-Denomy, J., Pawluk, A., Maxwell, K. L., & Davidson, A. R. (2013). Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature, 493(7432), 429–432.

    Article  Google Scholar 

  • Bos, L. (2000). 100 years of virology: From vitalism via molecular biology to genetic engineering. Trends in Microbiology, 8(2), 82–87.

    Article  Google Scholar 

  • Burian, R. M., & Gayon, J. (1999). The French school of genetics: From physiological and population genetics to regulatory molecular genetics. Annual Review of Genetics, 33, 313–349.

    Article  Google Scholar 

  • Burian, R. M., Gayon, J., & Zallen, D. (1988). The singular fate of genetics in the history of French biology, 1900–1940. Journal of the History of Biology, 21(3), 357–402.

    Article  Google Scholar 

  • Charpentier, E., & Doudna, J. A. (2013). Biotechnology: Rewriting a genome. Nature, 495(7439), 50–51.

    Article  Google Scholar 

  • Claverie, J.-M., & Abergel, C. (2010). Mimivirus: The emerging paradox of quasi-autonomous viruses. Trends in Genetics: TIG, 26(10), 431–437.

    Article  Google Scholar 

  • Claverie, J.-M., & Abergel, C. (2016). Les virus géants - État des connaissances, énigmes, controverses et perspectives. Médecine/sciences, 32(12), 1087–1096.

    Article  Google Scholar 

  • Creager, A. N. H. (2002). The life of a virus: Tobacco mosaic virus as an experimental model, 1930–1965. University of Chicago Press.

    Google Scholar 

  • Forterre, P. (2016). To be or not to be alive: How recent discoveries challenge the traditional definitions of viruses and life. Studies in History and Philosophy of Science Part c: Studies in History and Philosophy of Biological and Biomedical Sciences, 59, 100–108.

    Article  Google Scholar 

  • Gayon, J. (2003). Bachelard et l’histoire des sciences. In J.-J. Wunenburger (Ed.), Bachelard et l’épistémologie française (pp. 51–113). Presses Universitaires de France.

    Google Scholar 

  • Gayon, J. (2009). Philosophy of biology: An historico-critical characterization. In A. Brenner & J. Gayon (Eds.), French studies in the philosophy of science: Contemporary research in France (pp. 201–212). Springer.

    Chapter  Google Scholar 

  • Gayon, J., & Burian, R. M. (2004). National traditions and the emergence of genetics: The French example. Nature Reviews Genetics, 5(2), 150–156.

    Article  Google Scholar 

  • Guttinger, S. (2018). Riding the wave into a crisper future? Studies in History and Philosophy of Science Part c: Studies in History and Philosophy of Biological and Biomedical Sciences, 67, 32–35.

    Article  Google Scholar 

  • Horvath, P., & Barrangou, R. (2010). CRISPR/Cas, the immune system of bacteria and archaea. Science, 327, 167–170.

    Article  Google Scholar 

  • Hull, D. L. (1969). What philosophy of biology is not. Synthese, 20(2), 157–184.

    Article  Google Scholar 

  • Hull, D. L. (1974). Philosophy of biological science. Prentice-Hall.

    Google Scholar 

  • Hull, D. L. (2008). The history of the philosophy of biology. In M. Ruse (Ed.), The Oxford handbook of philosophy of biology (pp. 11–33). Oxford University Press.

    Google Scholar 

  • Jablonka, E. (2019). Lamarckian realities: The CRISPR-Cas system and beyond. Biology & Philosophy, 34(1), 1–5.

    Article  Google Scholar 

  • Koonin, E. V. (2019a). CRISPR: A new principle of genome engineering linked to conceptual shifts in evolutionary biology. Biology & Philosophy, 34(1), 1–30.

    Article  Google Scholar 

  • Koonin, E. V. (2019b). Lamarckian or not, CRISPR-Cas is an elaborate engine of directed evolution. Biology & Philosophy, 34(1), 1–6.

    Article  Google Scholar 

  • Koonin, E. V., & Dolja, V. V. (2013). A virocentric perspective on the evolution of life. Current Opinion in Virology, 3(5), 546–557.

    Article  Google Scholar 

  • Koonin, E. V., Makarova, K. S., & Zhang, F. (2017). Diversity, classification and evolution of CRISPR-Cas systems. Current Opinion in Microbiology, 37, 67–78.

    Article  Google Scholar 

  • Lander, E. S. (2016). The heroes of CRISPR. Cell, 164(1), 18–28.

    Article  Google Scholar 

  • Ledford, H. (2015). CRISPR, the disruptor. Nature News, 522(7554), 20–25.

    Article  Google Scholar 

  • Ledford, H. (2016). CRISPR: Gene editing is just the beginning. Nature News, 531(7593), 156–159.

    Article  Google Scholar 

  • Ledford, H. (2017). Five big mysteries about CRISPR’s origins. Nature News, 541(7637).

    Google Scholar 

  • Loison, L. (2010). Qu’est-ce que le néolamarckisme? les biologistes français et la question de l’évolution des espèces, 1870–1940. Vuibert.

    Google Scholar 

  • Loison, L., Gayon, J., & Burian, R. M. (2017). The contributions—and collapse—of Lamarckian heredity in Pasteurian molecular biology: 1. Lysogeny, 1900–1960. Journal of the History of Biology, 50(1), 5–52.

    Google Scholar 

  • Loison, L., & Pradeu, T. (Eds.). (2021). La biologie au défi de l’histoire. Mélanges offerts à Michel Morange. Éditions Matériologiques.

    Google Scholar 

  • Lustig, A., & Levine, A. J. (1992). One hundred years of virology. Journal of Virology, 66(8), 4629–4631.

    Article  Google Scholar 

  • Makarova, K. S., Grishin, N. V., Shabalina, S. A., Wolf, Y. I., & Koonin, E. V. (2006). A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biology Direct, 1(1), 1–26.

    Article  Google Scholar 

  • Malaterre, C., Pulizzotto, D., & Lareau, F. (2020). Revisiting three decades of Biology and Philosophy: A computational topic-modeling perspective. Biology & Philosophy, 35(1), 1–25.

    Article  Google Scholar 

  • Mayr, E. (1969). Footnotes on the philosophy of biology. Philosophy of Science, 36(2), 197–202.

    Article  Google Scholar 

  • Mojica, F. J. M., Díez-Villaseñor, C., García-Martínez, J., & Soria, E. (2005). Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. Journal of Molecular Evolution, 60(2), 174–182.

    Article  Google Scholar 

  • Morange, M. (2015a). What history tells us XXXVII. CRISPR-Cas: The discovery of an immune system in prokaryotes. Journal of Biosciences, 40(2), 221–223.

    Google Scholar 

  • Morange, M. (2015b). What history tells us XXXIX. CRISPR-Cas: From a prokaryotic immune system to a universal genome editing tool. Journal of Biosciences, 40(5), 829–832.

    Google Scholar 

  • Morgan, G. J. (2001). Bacteriophage biology and Kenneth Schaffner’s rendition of developmentalism. Biology and Philosophy, 16(1), 85–92.

    Article  Google Scholar 

  • Morgan, G. J. (2006). Why there was a useful plausible analogy between geodesic domes and spherical viruses. History and Philosophy of the Life Sciences, 28(2), 215–235.

    Google Scholar 

  • Morgan, G. J. (2010). Laws of biological design: A reply to John Beatty. Biology & Philosophy, 25(3), 379–389.

    Article  Google Scholar 

  • Morgan, G. J., & Pitts, W. B. (2008). Evolution without species: The case of mosaic bacteriophages. The British Journal for the Philosophy of Science, 59(4), 745–765.

    Article  Google Scholar 

  • Pourcel, C., Salvignol, G., & Vergnaud, G. (2005). CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology (reading, England), 151(3), 653–663.

    Article  Google Scholar 

  • Pradeu, T. (2009). Les limites du soi: Immunologie et identité biologique. Presses Universitaires de Montréal.

    Google Scholar 

  • Pradeu, T. (2017). Thirty years of Biology & Philosophy: Philosophy of which biology? Biology & Philosophy, 32(2), 149–167.

    Article  Google Scholar 

  • Pradeu, T. (2018). Jean Gayon, l’histoire, la philosophie et la biologie: Une synthèse moderne. In F. Merlin & P. Huneman (Eds.), Philosophie, histoire, biologie: Mélanges offerts à Jean Gayon (pp. 89–102). Éditions Matériologiques.

    Chapter  Google Scholar 

  • Pradeu, T. (2019). Philosophy of CRISPR-Cas: Introduction to Eugene Koonin’s target paper and commentaries. Biology & Philosophy, 34(1), 1–5.

    Article  Google Scholar 

  • Pradeu, T., Kostyrka, G., & Dupré, J. (2016). Understanding viruses: Philosophical investigations. Studies in History and Philosophy of Science Part c: Studies in History and Philosophy of Biological and Biomedical Sciences, 59, 57–63.

    Article  Google Scholar 

  • Pradeu, T., & Moreau, J.-F. (2019). CRISPR-Cas immunity: Beyond nonself and defence. Biology & Philosophy, 34(1), 1–6.

    Article  Google Scholar 

  • Raoult, D., & Forterre, P. (2008). Redefining viruses: Lessons from Mimivirus. Nature reviews. Microbiology, 6(4), 315–319.

    Google Scholar 

  • Ruse, M. (1973). The philosophy of biology. Hutchinson.

    Google Scholar 

  • Summers, W. C. (2014). Inventing viruses. Annual Review of Virology, 1(1), 25–35.

    Article  Google Scholar 

  • van Helvoort, T. (1994a). The construction of bacteriophage as bacterial virus: Linking endogenous and exogenous thought styles. Journal of the History of Biology, 27(1), 91–139.

    Article  Google Scholar 

  • van Helvoort, T. (1994b). History of virus research in the twentieth century: the problem of conceptual continuity. History of Science; an Annual Review of Literature, Research and Teaching, 32(2), 185–235.

    Google Scholar 

  • Veigl, S. J. (2019). A use/disuse paradigm for CRISPR-Cas systems. Biology & Philosophy, 34(1), 1–4.

    Article  Google Scholar 

  • Wideman, J. G., Inkpen, S. A., Doolittle, W. F., & Redfield, R. J. (2019). Mutationism, not Lamarckism, captures the novelty of CRISPR–Cas. Biology & Philosophy, 34(1), 1–6.

    Article  Google Scholar 

  • Woolley, S., Parke, E. C., Kelley, D., Poole, A. M., & Ganley, A. R. D. (2019). Striving for clarity about the “Lamarckian” nature of CRISPR-Cas systems. Biology & Philosophy, 34(1), 1–5.

    Article  Google Scholar 

Download references

Acknowledgements

I want to thank Jean Gayon for his constant trust and friendship. He was a model of strength and honor. Being his friend and learning from him has been one of the most important experiences of my life. Thanks to the École normale supérieure, the IHPST and Paris 1 Panthéon-Sorbonne University for allowing me to write my thesis under the direction of Jean Gayon. My research is supported by the European Research Council (ERC; European Union’s Horizon 2020 research and innovation programme—Grant agreement n° 637647—IDEM).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thomas Pradeu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Pradeu, T. (2023). Jean Gayon, History and Philosophy of Biology: A New Synthesis. In: Méthot, PO. (eds) Philosophy, History and Biology: Essays in Honour of Jean Gayon. History, Philosophy and Theory of the Life Sciences, vol 30. Springer, Cham. https://doi.org/10.1007/978-3-031-28157-0_5

Download citation

Publish with us

Policies and ethics

Navigation