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  1. Establishment of a rapid assay for sequencing of carried DNA and edited sites in gene-editing tomato plants

    Gene editing can modify gene function by inserting or deleting nucleotides in a specific region in a gene, which can alter the desired trait in the...

    Seon-Hwa Bae, Jae-Hyeon Oh, ... Jun-Sung Shin in Horticulture, Environment, and Biotechnology
    Article 01 August 2022
  2. DNA Sequencing Technologies and DNA Barcoding

    DNA barcodes are short, standardized DNA segments that geneticists can use to identify all living taxa. On the other hand, DNA barcoding identifies...
    Anisha David, J. Deepa Arul Priya, Akash Gautam in DNA Barcoding
    Protocol 2024
  3. A Rapid, Equipment-Free DNA Isolation Method for DNA Barcoding

    This rapid, equipment-free DNA isolation procedure using chromatography paper is a simple method that can be performed in less than 30 min and...
    Sharon Pepenella, Jennifer Hackett, ... David A. Micklos in DNA Barcoding
    Protocol 2024
  4. Chromatin Modifications in DNA Repair

    A requirement of nuclear processes that use DNA as a substrate is the manipulation of chromatin in which the DNA is packaged. Chromatin...
    Ashby J. Morrison, Xuetong Shen in Chromatin Dynamics in Cellular Function
    Chapter
  5. Community Science Initiatives Utilizing Environmental DNA

    The technology that utilizes environmental DNA (eDNA), which refers to DNA released by organisms into the environment, has rapidly advanced as a...
    Michio Kondoh, Minoru Kasada, ... Akifumi S. Tanabe in Community Science in Ecology
    Chapter 2024
  6. ddRAD Sequencing and DNA Barcoding

    Double-digest restriction site-associated DNA sequencing is a library preparation protocol that enables capturing variable sites across the genome...
    Vladislav Ivanov, Kyung Min Lee, Marko Mutanen in DNA Barcoding
    Protocol 2024
  7. Simple, Robust Invertebrate DNA Barcoding: Chelex-Based DNA Extraction and Optimized COI Amplification

    Chelex-based DNA extractions are well suited for student DNA barcoding research because they are simple, safe, and inexpensive and can be performed...
    Jennifer Hackett, Sharon Pepenella, ... David A. Micklos in DNA Barcoding
    Protocol 2024
  8. Classical Recombinant DNA Cloning

    Traditional molecular cloning involves a series of linked experimental steps performed with the overall goal of isolating (“cloning”) a specific DNA...
    Ana Mikić, Arqam Alomari, Darren M. Gowers in DNA Manipulation and Analysis
    Protocol 2023
  9. iTaxoTools 1.0: Improved DNA Barcode Exploration with TaxI2

    The overall availability of user-friendly software tools tailored to the analysis of DNA barcodes is limited. Several obvious functions such as...
    Miguel Vences, Stefanos Patmanidis, ... Nicolas Puillandre in DNA Barcoding
    Protocol 2024
  10. Single Molecule Imaging of DNA–Protein Interactions Using DNA Curtains

    Direct observation of enzymes that work to promote nucleic acid metabolism is a powerful approach to understanding their biochemical and biological...
    J. Brooks Crickard in DNA-Protein Interactions
    Protocol 2023
  11. DNA as Hereditary Material

    The relative simplicity of the structure of deoxyribonucleic acid (DNA) and the complexity of inheritance led to the assumption that DNA was not the...
    Hernán Eduardo Laurentin Táriba in Agricultural Genetics
    Chapter 2023
  12. Small RNA and DNA Methylation of Tea Plants

    Small RNAs are a category of short noncoding RNAs (ncRNAs) with 18–30 nt lengths. Based on their function and mechanisms of biogenesis, these small...
    Yu-Qiong Guo, Chen Zhu, ... Cai-Yun Tian in The Tea Plant Genome
    Chapter 2024
  13. DNA Probes for Analysis of the Activity of Key Enzymes of the Base Excision DNA Repair Pathway in Human Cells

    Abstract —The important role of DNA damage in the occurrence of various diseases, including cancer, has led to study of the mechanisms of genetic...

    I. V. Alekseeva, A. A. Kuznetsova, ... N. A. Kuznetsov in Molecular Biology
    Article 26 April 2023
  14. Influence of Nucleotide Context on Non-Specific Amplification of DNA with Bst exo DNA Polymerase

    Abstract

    Isothermal nucleic acids amplification that requires DNA polymerases with strand-displacement activity gained more attention in the last two...

    Ravil R. Garafutdinov, Olga Yu. Kupova, Assol R. Sakhabutdinova in Biochemistry (Moscow)
    Article 01 January 2024
  15. Manual Silica-Based DNA Extractions

    There are several silica-based extraction methods that utilize silica-packed columns or silica-coated paramagnetic resin and are suitable for the...
    Catherine Cupples Connon in Forensic DNA Analysis
    Protocol 2023
  16. DNA Barcoding for Assessing Biodiversity

    DNA barcoding is a powerful tool to identify species using nucleotide differences found in the cytochrome oxidase I mitochondrial gene between...
    Jorge L. Ramirez, Daniela Núñez-Rodriguez, ... Rina Ramírez in Conservation Genetics in the Neotropics
    Chapter 2023
  17. Analysis of Ancient Microbial DNA

    The development of next-generation sequencing has led to a breakthrough in the analysis of ancient genomes, and the subsequent genomic analyses of...
    Olivier Gorgé, E. Andrew Bennett, ... Thierry Grange in Microbial Environmental Genomics (MEG)
    Protocol 2023
  18. Future Directions of Forensic DNA Analysis

    Since its inception in mid 1980s, forensic DNA analysis techniques have progressed much in last few decades. The first decade (1985–1995) is...
    Hirak Ranjan Dash, Kelly M. Elkins, Noora Rashid Al-Snan in Advancements in Forensic DNA Analysis
    Chapter 2023
  19. The Efficiency of Various DNA Polymerases for Amplification of Long Sequences from Genomic DNA and cDNA of Cultivated Potatoes

    Abstract

    Amplification of long fragments from complex templates, such as eukaryotic genomic DNA, is considered a difficult task for most DNA...

    A. D. Antipov, N. E. Zlobin in Applied Biochemistry and Microbiology
    Article Open access 12 August 2023
  20. DNA double-strand break–capturing nuclear envelope tubules drive DNA repair

    Current models suggest that DNA double-strand breaks (DSBs) can move to the nuclear periphery for repair. It is unclear to what extent human DSBs...

    Mitra Shokrollahi, Mia Stanic, ... Karim Mekhail in Nature Structural & Molecular Biology
    Article 17 April 2024
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