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  1. Article

    Open Access

    Standardizing HER2 immunohistochemistry assessment: calibration of color and intensity variation in whole slide imaging caused by staining and scanning

    In the evaluation of human epidermal growth factor receptor 2 (HER2) immunohistochemistry (IHC) — one of the standard biomarkers for breast cancer— visual assessment is laborious and subjective. Image analysis...

    Chie Ohnishi, Takashi Ohnishi, Peter Ntiamoah, Dara S. Ross in Applied Microscopy (2023)

  2. Article

    Open Access

    A pilot study of micro-CT-based whole tissue imaging (WTI) on endoscopic submucosal dissection (ESD) specimens

    Endoscopic submucosal dissection can remove large superficial gastrointestinal lesions in en bloc. A detailed pathological evaluation of the resected specimen is required to assess the risk of recurrence after...

    Hirotsugu Sakamoto, Makoto Nishimura, Alexei Teplov, Galen Leung in Scientific Reports (2022)

  3. Article

    Open Access

    Automated 3D scoring of fluorescence in situ hybridization (FISH) using a confocal whole slide imaging scanner

    Fluorescence in situ hybridization (FISH) is a technique to visualize specific DNA/RNA sequences within the cell nuclei and provide the presence, location and structural integrity of genes on chromosomes. A co...

    Ziv Frankenstein, Naohiro Uraoka, Umut Aypar, Ruth Aryeequaye in Applied Microscopy (2021)

  4. No Access

    Chapter

    3-D Tissue Image Reconstruction from Digitized Serial Histologic Sections to Visualize Small Tumor Nests in Lung Adenocarcinomas

    3-D histology has become an attractive technique providing insights into morphology of histologic specimens. However, existing techniques in generating 3-D views from a stack of whole slide images are sc...

    Bartłomiej Pyciński, Yukako Yagi, Ann E. Walts in Information Technology in Biomedicine (2021)

  5. Article

    Open Access

    Validation of mitotic cell quantification via microscopy and multiple whole-slide scanners

    The establishment of whole-slide imaging (WSI) as a medical diagnostic device allows that pathologists may evaluate mitotic activity with this new technology. Furthermore, the image digitalization provides an ...

    Kazuhiro Tabata, Naohiro Uraoka, Jamal Benhamida, Matthew G. Hanna in Diagnostic Pathology (2019)

  6. No Access

    Article

    Staining Correction in Digital Pathology by Utilizing a Dye Amount Table

    The stained colors of the tissue components are popularly used as features for image analysis. However, variations in the staining condition of the histology slides prompt variations to the color distribution ...

    Pinky A. Bautista, Yukako Yagi in Journal of Digital Imaging (2015)

  7. Article

    Open Access

    3-dimensional digital reconstruction of the murine coronary system for the evaluation of chronic allograft vasculopathy

    Chronic allograft vasculopathy (CAV) is a major mechanism of graft failure of transplanted organs in humans. Morphometric analysis of coronary arteries enables the quantitation of CAV in mouse models of heart ...

    László Fónyad, Kazunobu Shinoda, Evan A Farkash, Martin Groher in Diagnostic Pathology (2015)

  8. Article

    Open Access

    Consistency and Standardization of Color in Medical Imaging: a Consensus Report

    This article summarizes the consensus reached at the Summit on Color in Medical Imaging held at the Food and Drug Administration (FDA) on May 8–9, 2013, co-sponsored by the FDA and ICC (International Color Con...

    Aldo Badano, Craig Revie, Andrew Casertano, Wei-Chung Cheng in Journal of Digital Imaging (2015)

  9. No Access

    Article

    Micro-computed tomography (Micro-CT): a novel approach for intraoperative breast cancer specimen imaging

    Intraoperative radiographic examination of breast specimens is commonly performed to confirm excision of image-detected breast lesions, but it is not reliable for assessing margin status. A more accurate metho...

    Rong Tang, Julliette M. Buckley, Leopoldo Fernandez in Breast Cancer Research and Treatment (2013)

  10. Article

    Open Access

    Optical endomicroscopy and the road to real-time, in vivo pathology: present and future

    Epithelial cancers account for substantial mortality and are an important public health concern. With the need for earlier detection and treatment of these malignancies, the ability to accurately detect precan...

    Charles S Carignan, Yukako Yagi in Diagnostic Pathology (2012)

  11. No Access

    Article

    Imaging the subcellular structure of human coronary atherosclerosis using micro–optical coherence tomography

    Progress in understanding coronary artery disease has been hampered by the inability of current approaches to interrogate the human coronary wall at cellular-level resolution. Here, Liu and colleagues introduc...

    Linbo Liu, Joseph A Gardecki, Seemantini K Nadkarni, Jimmy D Toussaint in Nature Medicine (2011)

  12. Article

    Open Access

    Color standardization and optimization in Whole Slide Imaging

    Standardization and validation of the color displayed by digital slides is an important aspect of digital pathology implementation. While the most common reason for color variation is the variance in the proto...

    Yukako Yagi in Diagnostic Pathology (2011)

  13. Article

    Open Access

    Localization of Eosinophilic Esophagitis from H&E stained images using multispectral imaging

    This study is an initial investigation on the capability of multispectral imaging to capture subtle spectral information that would enable the automatic delineation between the eosinophilic esophagitis and oth...

    Pinky A Bautista, Yukako Yagi in Diagnostic Pathology (2011)

  14. Article

    Open Access

    Network for whole slide imaging (WSI) clinical usage

    Yukako Yagi in Diagnostic Pathology (2010)

  15. Article

    Open Access

    The importance of optical optimization in whole slide imaging (WSI) and digital pathology imaging

    In the last 10 years, whole slide imaging (WSI) has seen impressive progress not only in image quality and scanning speed but also in the variety of systems available to pathologists. However, we have noticed ...

    Yukako Yagi, John R Gilbertson in Diagnostic Pathology (2008)

  16. Article

    Open Access

    A relationship between slide quality and image quality in whole slide imaging (WSI)

    This study examined the effect of tissue section thickness and consistency – parameters outside the direct control of the imaging devices themselves – on WSI capture speed and image quality. Preliminary data i...

    Yukako Yagi, John R Gilbertson in Diagnostic Pathology (2008)

  17. Article

    Open Access

    Histology, imaging and new diagnostic work-flows in pathology

    Since their introduction in 1999, fully automated, high speed, high-resolution whole slide imaging devices have become increasing more reliable, fast and capable. While by no means perfect, these devices have ...

    John Gilbertson, Yukako Yagi in Diagnostic Pathology (2008)

  18. Article

    Open Access

    Primary histologic diagnosis using automated whole slide imaging: a validation study

    Only prototypes 5 years ago, high-speed, automated whole slide imaging (WSI) systems (also called digital slide systems, virtual microscopes or wide field imagers) are becoming increasingly capable and robust....

    John R Gilbertson, Jonhan Ho, Leslie Anthony, Drazen M Jukic in BMC Clinical Pathology (2006)

  19. No Access

    Article

    Color Correction of Pathological Images Based on Dye Amount Quantification

    Pathological images are color images of stained tissue slides, the color of which varies depending on staining conditions. For reliable diagnosis, the color variation must be corrected in these images. This pa...

    Tokiya Abe, Yuri Murakami, Masahiro Yamaguchi, Nagaaki Ohyama in Optical Review (2005)

  20. No Access

    Article

    Digital Staining of Unstained Pathological Tissue Samples through Spectral Transmittance Classification

    Histological structures of a pathological tissue sample convey information relevant to the diagnosis of the disease that might have afficted the person. To reveal the morphology of these structures clearly, pa...

    Pinky A. Bautista, Tokiya Abe, Masahiro Yamaguchi, Yukako Yagi in Optical Review (2005)

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