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  1. Article

    Open Access

    Computational dissection of genetic variation modulating the response of multiple photosynthetic phenotypes to the light environment

    The expression of biological traits is modulated by genetics as well as the environment, and the level of influence exerted by the latter may vary across characteristics. Photosynthetic traits in plants are co...

    Huiying Gong, Ziyang Zhou, Chenhao Bu, Deqiang Zhang, Qing Fang in BMC Genomics (2024)

  2. No Access

    Article

    Dynamic physiological and transcriptome changes reveal a potential relationship between the circadian clock and salt stress response in Ulmus pumila

    Despite the important role the circadian clock plays in numerous critical physiological responses in plants, such as hypocotyl elongation, leaf movement, stomatal opening, flowering, and stress responses, ther...

    Panfei Chen, Peng Liu, Quanfeng Zhang, Lei Zhao in Molecular Genetics and Genomics (2022)

  3. No Access

    Chapter and Conference Paper

    A Higher Order Prediction Model of Populus Simonii’s Net Photosynthetic Rate Based on Improved Gradient Boosting Method

    We develop a net photosynthetic rate prediction model of Populus simonii by selecting 548 individuals as core populations that represent almost the entire geographic distribution of P. simonii. We measure photosy...

    **ao-Yu Zhang, **nyue Ji, Yuepeng Song in Recent Featured Applications of Artificial… (2020)

  4. No Access

    Article

    Indole-3-acetic acid has long-term effects on long non-coding RNA gene methylation and growth in Populus tomentosa

    DNA methylation and long non-coding RNAs (lncRNAs) regulate plant growth and development, but their relationship and effect on responses to the auxin phytohormone indole-3-acetic acid (IAA) remain largely unkn...

    Dong Ci, Min Tian, Yuepeng Song, Qingzhang Du in Molecular Genetics and Genomics (2019)

  5. No Access

    Article

    Transcriptional regulation of chilling stress responsive long noncoding RNAs in Populus simonii

    We report genome-wide identification and functional prediction of lncRNAs under chilling stress, the present study deepened our understanding of the transcriptional regulation mechanism of poplar under chillin...

    Min Tian, Dong Ci, Yuepeng Song, Deqiang Zhang in Trees (2019)

  6. No Access

    Article

    Wear Resistance of the La62Cu12Ni12Al14 Bulk Metallic Glass Under Dry Friction Conditions

    The wear properties of a La62Cu12Ni12Al14 bulk metallic glass (BMG) using sliding wear system under the various normal loads and the annealing conditions have been investigated. Although the La62Cu12Ni12Al14 BMG ...

    **g Guo, Soo-Hyun Joo, Dong-Hai Pi, **aohui Zhang, **aorong Zhang in Tribology Letters (2017)

  7. No Access

    Protocol

    The Role of Long Noncoding RNAs in Plant Stress Tolerance

    Plants must adapt to multiple biotic and ; thus, sensing and responding to environmental signals is imperative for their survival. Moreover, understanding these responses is imperative for efforts to improve ...

    Yuepeng Song, Deqiang Zhang in Plant Stress Tolerance (2017)

  8. No Access

    Article

    Association studies reveal the effect of genetic variation in lncRNA UGTRL and its putative target PtoUGT88A1 on wood formation in Populus tomentosa

    Long noncoding RNAs (lncRNAs) play significant roles in the growth and development of herbaceous plants by regulating target genes; however, the significance of lncRNA-messenger RNA (mRNA) interactions needs t...

    Mingyang Quan, Jiaxing Tian, **aohui Yang, Qingzhang Du in Tree Genetics & Genomes (2016)

  9. Article

    Open Access

    The genetic regulatory network centered on Pto-Wuschela and its targets involved in wood formation revealed by association studies

    Transcription factors (TFs) regulate gene expression and can strongly affect phenotypes. However, few studies have examined TF variants and TF interactions with their targets in plants. Here, we used genetic a...

    **aohui Yang, Zunzheng Wei, Qingzhang Du, **hui Chen, Qingshi Wang in Scientific Reports (2015)

  10. No Access

    Article

    Thickness inhomogeneity in hardness and microstructure of copper after the compressive stage in high-pressure torsion

    Distinction between plastic deformation occuring in compression and compression-torsion stages is important for understanding the properties and microstructures of materials processed by high-pressure torsion ...

    Yuepeng Song, Wenke Wang, Dong Jun Lee in Metals and Materials International (2015)

  11. No Access

    Article

    Fabrication of W-Cu alloy via combustion synthesis infiltration under an ultra-gravity field

    Tungsten copper alloy with a tungsten concentrate of 70 vol% was prepared by self-propagating high-temperature synthesis in an ultra-gravity field. The phase structures and components of the W-Cu alloy fabrica...

    Yuepeng Song, Qian Li, Jiangtao Li, Gang He in Metals and Materials International (2014)

  12. No Access

    Article

    Comparison of the physiological effects and transcriptome responses of Populus simonii under different abiotic stresses

    In the field, perennial plants such as poplar (Populus spp.) must adapt to simultaneous exposure to various abiotic stresses, which can affect their growth and survival. However, the mechanisms for stress-specifi...

    Yuepeng Song, Dong Ci, Min Tian, Deqiang Zhang in Plant Molecular Biology (2014)

  13. No Access

    Article

    Finite element analysis of the effect of friction in high pressure torsion

    High pressure torsion (HPT) is one of the most important techniques among various methods that create severe plastic deformation in the production of bulk materials with nano/ultrafine grained microstructures....

    Yuepeng Song, Wenke Wang, Dongsheng Gao, Eun Yoo Yoon in Metals and Materials International (2014)

  14. Article

    Open Access

    Effects of high temperature on photosynthesis and related gene expression in poplar

    High temperature, whether transitory or constant, causes physiological, biochemical and molecular changes that adversely affect tree growth and productivity by reducing photosynthesis. To elucidate the photosy...

    Yuepeng Song, Qingqing Chen, Dong Ci, **nning Shao, Deqiang Zhang in BMC Plant Biology (2014)

  15. No Access

    Article

    Sexual dimorphic floral development in dioecious plants revealed by transcriptome, phytohormone, and DNA methylation analysis in Populus tomentosa

    Dioecious plants have evolved sex-specific floral development mechanisms. However, the precise gene expression patterns in dioecious plant flower development remain unclear. Here, we used andromonoecious popla...

    Yuepeng Song, Kaifeng Ma, Dong Ci, Qingqing Chen, Jiaxing Tian in Plant Molecular Biology (2013)

  16. No Access

    Article

    Analysis of stress states in compression stage of high pressure torsion using slab analysis method and finite element method

    High pressure torsion (HPT) is useful for achieving substantial grain refinement to ultrafine grained/nanocrystalline states in bulk metallic solids. Most publications that analyzed the HPT process used experi...

    Wenke Wang, Yuepeng Song, Dongsheng Gao, Eun Yoo Yoon in Metals and Materials International (2013)

  17. No Access

    Article

    Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii

    We report global gene expression patterns of poplar in response to chilling stress. A total of 1,085 significantly differentially expressed genes, involved in photosynthesis, signal transducti...

    Yuepeng Song, Qingqing Chen, Dong Ci, Deqiang Zhang in Plant Cell Reports (2013)

  18. No Access

    Article

    The SUPERMAN gene family in Populus: nucleotide diversity and gene expression in a dioecious plant

    SUP gene family expression and regulation patterns reported in dioecious woody plant. Phylogenetic and nucleotide diversity analysis indicated PtoSUP1 ...

    Yuepeng Song, Kaifeng Ma, Dong Ci, Xueyuan Tian, Zhiyi Zhang in Plant Cell Reports (2013)

  19. No Access

    Article

    Genome-Wide Analysis of Gene Expression in Response to Drought Stress in Populus simonii

    Drought tolerance varies considerably in different species of Populus, and is a complex trait, involving the interplay of a vast array of genes. Although Populus simonii is one of the most important commercial pl...

    **hui Chen, Yuepeng Song, He Zhang, Deqiang Zhang in Plant Molecular Biology Reporter (2013)

  20. No Access

    Article

    Hardness and microstructure of interstitial free steels in the early stage of high-pressure torsion

    The hardness and microstructure distributions in interstitial free (IF) steel disks processed via the high-pressure torsion (HPT) process with an early stage (up to 1 turn) are investigated using experimental ...

    Yuepeng Song, Wenke Wang, Dongsheng Gao, Eun Yoo Yoon in Journal of Materials Science (2013)

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