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  1. No Access

    Article

    miR-212 and miR-132 are dispensable for mouse mammary gland development

    Hiroyuki Kayo, Kotaro Kiga, Yoko Fukuda-Yuzawa, Sebastian Hedlund in Nature Genetics (2014)

  2. Article

    Open Access

    Epigenetic silencing of miR-210 increases the proliferation of gastric epithelium during chronic Helicobacter pylori infection

    Persistent colonization of the gastric mucosa by Helicobacter pylori (Hp) elicits chronic inflammation and aberrant epithelial cell proliferation, which increases the risk of gastric cancer. Here we examine the a...

    Kotaro Kiga, Hitomi Mimuro, Masato Suzuki, Aya Shinozaki-Ushiku in Nature Communications (2014)

  3. Article

    Open Access

    Late-onset spastic ataxia phenotype in a patient with a homozygous DDHD2 mutation

    Autosomal recessive cerebellar ataxias and autosomal recessive hereditary spastic paraplegias (ARHSPs) are clinically and genetically heterogeneous neurological disorders. Herein we describe Japanese siblings ...

    Hiroshi Doi, Masao Ushiyama, Takashi Baba, Katsuko Tani in Scientific Reports (2014)

  4. Article

    Open Access

    Genome-wide compendium and functional assessment of in vivo heart enhancers

    Whole-genome sequencing is identifying growing numbers of non-coding variants in human disease studies, but the lack of accurate functional annotations prevents their interpretation. We describe the genome-wid...

    Diane E. Dickel, Iros Barozzi, Yiwen Zhu, Yoko Fukuda-Yuzawa in Nature Communications (2016)

  5. No Access

    Article

    Enhancer redundancy provides phenotypic robustness in mammalian development

    Gene enhancer knockout phenotypes and analysis of enhancer activity patterns show that developmental genes are regulated by multiple redundant enhancers in mouse embryos.

    Marco Osterwalder, Iros Barozzi, Virginie Tissières, Yoko Fukuda-Yuzawa in Nature (2018)

  6. Article

    Open Access

    An atlas of dynamic chromatin landscapes in mouse fetal development

    The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after concept...

    David U. Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee in Nature (2020)

  7. No Access

    Article

    Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

    Enhancers are important non-coding elements, but they have traditionally been hard to characterize experimentally. The development of massively parallel assays allows the characterization of large numbers of e...

    Anurag Sethi, Mengting Gu, Emrah Gumusgoz, Landon Chan, Koon-Kiu Yan in Nature Methods (2020)

  8. Article

    Open Access

    Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    David U. Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee in Nature (2020)

  9. Article

    Open Access

    Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-020-03089-4.

    David U. Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee in Nature (2021)

  10. Article

    Open Access

    Topologically associating domain boundaries are required for normal genome function

    Topologically associating domain (TAD) boundaries partition the genome into distinct regulatory territories. Anecdotal evidence suggests that their disruption may interfere with normal gene expression and caus...

    Sudha Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang in Communications Biology (2023)

  11. Article

    Open Access

    Dynamic enhancer landscapes in human craniofacial development

    The genetic basis of human facial variation and craniofacial birth defects remains poorly understood. Distant-acting transcriptional enhancers control the fine-tuned spatiotemporal expression of genes during c...

    Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral in Nature Communications (2024)