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  1. Article

    Open Access

    Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project

    A major obstacle faced by families with rare diseases is obtaining a genetic diagnosis. The average "diagnostic odyssey" lasts over five years and causal variants are identified in under 50%, even when capturi...

    Sarah L. Stenton, Melanie C. O’Leary, Gabrielle Lemire, Grace E. VanNoy in Human Genomics (2024)

  2. Article

    Open Access

    Predicting the impact of rare variants on RNA splicing in CAGI6

    Variants which disrupt splicing are a frequent cause of rare disease that have been under-ascertained clinically. Accurate and efficient methods to predict a variant’s impact on splicing are needed to interpre...

    Jenny Lord, Carolina Jaramillo Oquendo, Htoo A. Wai, Andrew G. L. Douglas in Human Genetics (2024)

  3. Article

    Open Access

    Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease

    The gut microbiota plays a crucial role in regulating host metabolism and producing uremic toxins in patients with end-stage renal disease (ESRD). Our objective is to advance toward a holistic understanding of...

    Pan Zhang, **fan Wang, Shenghui Li, Xuesen Cao, Jianzhou Zou, Yi Fang in Genome Biology (2023)

  4. No Access

    Article

    Immunoglobulin VH gene diversity and somatic hypermutation during SIV infection of rhesus macaques

    B cell functional defects are associated with delayed neutralizing antibody development in pathogenic lentivirus infections. However, the timeframe for alterations in the antibody repertoire and somatic hyperm...

    Kejun Guo, Kalani Halemano, Kimberly Schmitt, Miki Katuwal, Yaqiong Wang in Immunogenetics (2015)