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  1. Article

    Open Access

    Host defence peptide plectasin targets bacterial cell wall precursor lipid II by a calcium-sensitive supramolecular mechanism

    Antimicrobial resistance is a leading cause of mortality, calling for the development of new antibiotics. The fungal antibiotic plectasin is a eukaryotic host defence peptide that blocks bacterial cell wall sy...

    Shehrazade Jekhmane, Maik G. N. Derks, Sourav Maity in Nature Microbiology (2024)

  2. No Access

    Article

    CD63 sorts cholesterol into endosomes for storage and distribution via exosomes

    Extracellular vesicles such as exosomes are now recognized as key players in intercellular communication. Their role is influenced by the specific repertoires of proteins and lipids, which are enriched when th...

    Roberta Palmulli, Mickaël Couty, Melissa C. Piontek in Nature Cell Biology (2024)

  3. No Access

    Protocol

    Visualizing Molecular Dynamics by High-Speed Atomic Force Microscopy

    Dynamic processes and structural changes of biological molecules are essential to life. While conventional atomic force microscopy (AFM) is able to visualize molecules and supramolecular assemblies at sub-nano...

    Chris van Ewijk, Sourav Maity, Wouter H. Roos in Single Molecule Analysis (2024)

  4. No Access

    Article

    Light-driven eco-evolutionary dynamics in a synthetic replicator system

    Darwinian evolution involves the inheritance and selection of variations in reproducing entities. Selection can be based on, among others, interactions with the environment. Conversely, the replicating entitie...

    Kai Liu, Alex Blokhuis, Chris van Ewijk, Armin Kiani, Juntian Wu in Nature Chemistry (2024)

  5. No Access

    Protocol

    Atomic Force Microscopy: An Introduction

    Imaging of nano-sized particles and sample features is crucial in a variety of research fields, for instance, in biological sciences, where it is paramount to investigate structures at the single particle leve...

    Yuzhen Feng, Wouter H. Roos in Single Molecule Analysis (2024)

  6. Article

    Open Access

    Lateral membrane organization as target of an antimicrobial peptidomimetic compound

    Antimicrobial resistance is one of the leading concerns in medical care. Here we study the mechanism of action of an antimicrobial cationic tripeptide, AMC-109, by combining high speed-atomic force microscopy,...

    Adéla Melcrová, Sourav Maity, Josef Melcr, Niels A. W. de Kok in Nature Communications (2023)

  7. No Access

    Article

    Structural basis of CHMP2A–CHMP3 ESCRT-III polymer assembly and membrane cleavage

    The endosomal sorting complex required for transport (ESCRT) is a highly conserved protein machinery that drives a divers set of physiological and pathological membrane remodeling processes. However, the struc...

    Kimi Azad, Delphine Guilligay, Cecile Boscheron in Nature Structural & Molecular Biology (2023)

  8. Article

    Open Access

    Teixobactin kills bacteria by a two-pronged attack on the cell envelope

    Antibiotics that use novel mechanisms are needed to combat antimicrobial resistance13. Teixobactin4 represents a new class of antibiotics with a unique chemical scaffold and lack of detectable resistance. Teixob...

    Rhythm Shukla, Francesca Lavore, Sourav Maity, Maik G. N. Derks, Chelsea R. Jones in Nature (2022)

  9. Article

    Open Access

    Freestanding non-covalent thin films of the propeller-shaped polycyclic aromatic hydrocarbon decacyclene

    Molecularly thin, nanoporous thin films are of paramount importance in material sciences. Their use in a wide range of applications requires control over their chemical functionalities, which is difficult to a...

    Alex van der Ham, Xue Liu, Dario Calvani, Adéla Melcrová in Nature Communications (2022)

  10. Article

    Open Access

    The ESCRT-III isoforms CHMP2A and CHMP2B display different effects on membranes upon polymerization

    ESCRT-III proteins are involved in many membrane remodeling processes including multivesicular body biogenesis as first discovered in yeast. In humans, ESCRT-III CHMP2 exists as two isoforms, CHMP2A and CHMP2B...

    Maryam Alqabandi, Nicola de Franceschi, Sourav Maity, Nolwenn Miguet in BMC Biology (2021)

  11. Article

    Physics of viral dynamics

    Viral capsids are often regarded as inert structural units, but in actuality they display fascinating dynamics during different stages of their life cycle. With the advent of single-particle approaches and hig...

    Robijn F. Bruinsma, Gijs J. L. Wuite, Wouter H. Roos in Nature Reviews Physics (2021)

  12. Article

    Open Access

    Author Correction: Human ESCRT-III polymers assemble on positively curved membranes and induce helical membrane tube formation

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Aurélie Bertin, Nicola de Franceschi, Eugenio de la Mora in Nature Communications (2020)

  13. Article

    Open Access

    Human ESCRT-III polymers assemble on positively curved membranes and induce helical membrane tube formation

    Endosomal sorting complexes for transport-III (ESCRT-III) assemble in vivo onto membranes with negative Gaussian curvature. How membrane shape influences ESCRT-III polymerization and how ESCRT-III shapes membr...

    Aurélie Bertin, Nicola de Franceschi, Eugenio de la Mora in Nature Communications (2020)

  14. No Access

    Article

    Atomic force microscopy-based mechanobiology

    Mechanobiology emerges at the crossroads of medicine, biology, biophysics and engineering and describes how the responses of proteins, cells, tissues and organs to mechanical cues contribute to development, di...

    Michael Krieg, Gotthold Fläschner, David Alsteens in Nature Reviews Physics (2019)

  15. No Access

    Protocol

    AFM Nanoindentation Experiments on Protein Shells: A Protocol

    Proteinaceous assemblies are ubiquitous in nature. One important form of these assemblies are such as viruses; however, a variety of other protein exist. To deepen our knowledge on the structure and functi...

    Yukun Guo, Wouter H. Roos in Atomic Force Microscopy (2019)

  16. Article

    Open Access

    The fluid membrane determines mechanics of erythrocyte extracellular vesicles and is softened in hereditary spherocytosis

    Extracellular vesicles (EVs) are widely studied regarding their role in cell-to-cell communication and disease, as well as for applications as biomarkers or drug delivery vehicles. EVs contain membrane and int...

    Daan Vorselen, Susan M. van Dommelen, Raya Sorkin in Nature Communications (2018)

  17. Article

    Open Access

    A single point mutation in precursor protein VI doubles the mechanical strength of human adenovirus

    Viruses are extensively studied as vectors for vaccine applications and gene therapies. For these applications, understanding the material properties of viruses is crucial for creating optimal functionality. U...

    Mariska G. M. van Rosmalen, Glen R. Nemerow in Journal of Biological Physics (2018)

  18. No Access

    Protocol

    Atomic Force Microscopy: An Introduction

    Imaging of nano-sized particles and sample features is crucial in a variety of research fields. For instance in biological sciences, where it is paramount to investigate structures at the single particle level...

    Melissa C. Piontek, Wouter H. Roos in Single Molecule Analysis (2018)

  19. Article

    Open Access

    Probing the mechanical stability of bridged DNA-H-NS protein complexes by single-molecule AFM pulling

    Atomic force microscopy (AFM) has proven to be a powerful tool for the study of DNA-protein interactions due to its ability to image single molecules at the nanoscale. However, the use of AFM in force spectros...

    Yan Liang, Ramon A. van der Valk, Remus T. Dame, Wouter H. Roos in Scientific Reports (2017)

  20. Article

    Open Access

    Controlled tip wear on high roughness surfaces yields gradual broadening and rounding of cantilever tips

    Tip size in atomic force microscopy (AFM) has a major impact on the resolution of images and on the results of nanoindentation experiments. Tip wear is therefore a key limitation in the application of AFM. Her...

    Daan Vorselen, Ernst S. Kooreman, Gijs J. L. Wuite, Wouter H. Roos in Scientific Reports (2016)

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