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  1. Article

    Open Access

    Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

    Current understanding of the carbon cycle in methanogenic environments involves trophic interactions such as interspecies H2 transfer between organotrophs and methanogens. However, many metabolic processes are th...

    Masaru K. Nobu, Takashi Narihiro, Ran Mei, Yoichi Kamagata, Patrick K. H. Lee in Microbiome (2020)

  2. Article

    Open Access

    Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes

    Microorganisms in activated sludge (AS) play key roles in the wastewater treatment processes. However, their ecological behaviors and differences from microorganisms in other environments have mainly been stud...

    Lin Ye, Ran Mei, Wen-Tso Liu, Hongqiang Ren, Xu-**ang Zhang in Microbiome (2020)

  3. Article

    Open Access

    Quantifying the contribution of microbial immigration in engineered water systems

    Immigration is a process that can influence the assembly of microbial communities in natural and engineered environments. However, it remains challenging to quantitatively evaluate the contribution of this pro...

    Ran Mei, Wen-Tso Liu in Microbiome (2019)

  4. Article

    Open Access

    Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process

    Ubiquitous in natural and engineered ecosystems, microbial immigration is one of the mechanisms sha** community assemblage. However, quantifying immigration impact remains challenging especially at individua...

    Ran Mei, **ha Kim, Fernanda P. Wilson, Benjamin T. W. Bocher, Wen-Tso Liu in Microbiome (2019)