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  1. Article

    Open Access

    Development of a 1:1-binding biparatopic anti-TNFR2 antagonist by reducing signaling activity through epitope selection

    Conventional bivalent antibodies against cell surface receptors often initiate unwanted signal transduction by crosslinking two antigen molecules. Biparatopic antibodies (BpAbs) bind to two different epitopes ...

    Hiroki Akiba, Junso Fujita, Tomoko Ise, Kentaro Nishiyama in Communications Biology (2023)

  2. No Access

    Protocol

    Purification and CryoEM Image Analysis of the Bacterial Flagellar Filament

    The bacterial flagellum is a large assembly of about 30 different proteins and is divided into three parts: the filament that acts as a screw propeller, the hook as a universal joint, and the basal body as a r...

    Tomoko Yamaguchi, Tomoko Miyata, Fumiaki Makino in Bacterial and Archaeal Motility (2023)

  3. Article

    Open Access

    Structure of the molecular bushing of the bacterial flagellar motor

    The basal body of the bacterial flagellum is a rotary motor that consists of several rings (C, MS and LP) and a rod. The LP ring acts as a bushing supporting the distal rod for its rapid and stable rotation wi...

    Tomoko Yamaguchi, Fumiaki Makino, Tomoko Miyata, Tohru Minamino in Nature Communications (2021)

  4. Article

    Open Access

    Native flagellar MS ring is formed by 34 subunits with 23-fold and 11-fold subsymmetries

    The bacterial flagellar MS ring is a transmembrane complex acting as the core of the flagellar motor and template for flagellar assembly. The C ring attached to the MS ring is involved in torque generation and...

    Akihiro Kawamoto, Tomoko Miyata, Fumiaki Makino, Miki Kinoshita in Nature Communications (2021)

  5. Article

    Open Access

    Structure of the native supercoiled flagellar hook as a universal joint

    The Bacterial flagellar hook is a short supercoiled tubular structure made from a helical assembly of the hook protein FlgE. The hook acts as a universal joint that connects the flagellar basal body and filame...

    Takayuki Kato, Fumiaki Makino, Tomoko Miyata, Péter Horváth in Nature Communications (2019)

  6. No Access

    Living Reference Work Entry In depth

    Electron Microscopy of Motor Structure and Possible Mechanisms

    Tohru Minamino, Takayuki Kato, Fumiaki Makino, Péter Horváth in Encyclopedia of Biophysics

  7. Article

    Open Access

    Straight and rigid flagellar hook made by insertion of the FlgG specific sequence into FlgE

    The bacterial flagellar hook connects the helical flagellar filament to the rotary motor at its base. Bending flexibility of the hook allows the helical filaments to form a bundle behind the cell body to produ...

    Koichi D. Hiraoka, Yusuke V. Morimoto, Yumi Inoue, Takashi Fujii in Scientific Reports (2017)

  8. Article

    Open Access

    Identical folds used for distinct mechanical functions of the bacterial flagellar rod and hook

    The bacterial flagellum is a motile organelle driven by a rotary motor, and its axial portions function as a drive shaft (rod), a universal joint (hook) and a helical propeller (filament). The rod and hook are...

    Takashi Fujii, Takayuki Kato, Koichi D. Hiraoka, Tomoko Miyata in Nature Communications (2017)

  9. No Access

    Protocol

    Bisulfite Sequencing for DNA Methylation Analysis of Primary Muscle Stem Cells

    In skeletal muscle, DNA methylation contributes to the suppression of gene expression in several biological processes and diseases. A protocol for the detection of methylated cytosine was thus established base...

    Kohei Miyata, Masashi Naito, Tomoko Miyata, Sho Mokuda in Skeletal Muscle Development (2017)

  10. No Access

    Article

    A case of gastric carcinosarcoma with distant metastasis for which chemotherapy with S-1 plus cisplatin was transiently effective

    Gastric carcinosarcoma is a very rare tumor for which there is no standard regimen of chemotherapy. We report a case of a 61-year-old woman having gastric carcinosarcoma with liver and lymph node metastases. S...

    Osamu Maeda, Takafumi Ando, Kazuhiro Ishiguro in International Cancer Conference Journal (2014)

  11. Article

    Open Access

    Common and distinct structural features of Salmonella injectisome and flagellar basal body

    Bacterial pathogens use an injectisome to deliver virulence proteins into eukaryotic host cells. The bacterial flagellum and injectisome export their component proteins for self-assembly. These two systems sho...

    Akihiro Kawamoto, Yusuke V. Morimoto, Tomoko Miyata, Tohru Minamino in Scientific Reports (2013)

  12. No Access

    Reference Work Entry In depth

    Electron Microscopy of Motor Structure and Possible Mechanisms

    Tohru Minamino, Takayuki Kato, Tomoko Miyata, Keiichi Namba in Encyclopedia of Biophysics (2013)

  13. No Access

    Article

    Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases

    FliJ interacts with many flagellar proteins involved in protein export, but its function was unclear. Now the crystal structure of FliJ shows it is a homolog of the F1-ATPase γ-subunit. Binding of FliI to FliJ...

    Tatsuya Ibuki, Katsumi Imada, Tohru Minamino in Nature Structural & Molecular Biology (2011)

  14. No Access

    Article

    Time spatial labeling inversion pulse cerebral MR angiography without subtraction by use of dual inversion recovery background suppression

    Time-spatial labeling inversion pulse (time-SLIP), which is a technique of nonenhanced magnetic resonance angiography (MRA) based on arterial spin labeling (ASL), is used in various situations. Although subtra...

    Yoshiyuki Ishimori, Masahiko Monma, Hiraku Kawamura in Radiological Physics and Technology (2011)

  15. No Access

    Article

    Neuroendocrine tumor in the breast

    A 34-year-old woman with a past history of a carcinoid tumor in the right ovary presented with a right breast mass found on contrast-enhanced computed tomography (CT) of the chest. She was asymptomatic, and he...

    Hiroshi Ogawa, Akiko Nishio, Hiroko Satake, Shinji Naganawa in Radiation Medicine (2008)

  16. No Access

    Article

    The clamp-loading complex for processive DNA replication

    DNA polymerase requires two processing factors, sliding clamps and clamp loaders, to direct rapid and accurate duplication of genomic DNA. In eukaryotes, proliferating cell nuclear antigen (PCNA), the ring-sha...

    Tomoko Miyata, Takuji Oyama, Kouta Mayanagi in Nature Structural & Molecular Biology (2004)