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  1. Article

    Open Access

    Data collaboration analysis in predicting diabetes from a small amount of health checkup data

    Recent studies showed that machine learning models such as gradient-boosting decision tree (GBDT) can predict diabetes with high accuracy from big data. In this study, we asked whether highly accurate predicti...

    Go Uchitachimoto, Noriyoshi Sukegawa, Masayuki Kojima, Rina Kagawa in Scientific Reports (2023)

  2. Article

    Open Access

    Extracellular vesicles derived from Wharton’s Jelly mesenchymal stem cells inhibit the tumor environment via the miR-125b/HIF1α signaling pathway

    Triple negative breast cancer (TNBC) is associated with worse outcomes and results in high mortality; therefore, great efforts are required to find effective treatment. In the present study, we suggested a nov...

    Yun-Hsuan Chang, Cat-Khanh Vuong, Nhat-Hoang Ngo, Toshiharu Yamashita in Scientific Reports (2022)

  3. Article

    Open Access

    Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells

    Highly-lignified culms of bamboo show distinctive anatomical and mechanical properties compared with the culms of other grass species. A cell culture system for Phyllostachys nigra has enabled investigating the a...

    Shinjiro Ogita, Taiji Nomura, Yasuo Kato, Yukiko Uehara-Yamaguchi in Scientific Reports (2018)

  4. Article

    Open Access

    Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley

    Barley is one of the founder crops of Old world agriculture and has become the fourth most important cereal worldwide. Information on genome-scale DNA polymorphisms allows elucidating the evolutionary history ...

    Kotaro Takahagi, Yukiko Uehara-Yamaguchi, Takuhiro Yoshida in Scientific Reports (2016)

  5. Article

    Open Access

    Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon

    Brachypodium distachyon is a new model plant closely related to wheat and other cereals. In this study, we performed a comprehensive analysis of hormone-regulated genes in Brachypodium distachyon using RNA sequen...

    Yusuke Kakei, Keiichi Mochida, Tetsuya Sakurai, Takuhiro Yoshida in Scientific Reports (2015)

  6. Article

    Open Access

    Content of intrinsic disorder influences the outcome of cell-free protein synthesis

    Cell-free protein synthesis is used to produce proteins with various structural traits. Recent bioinformatics analyses indicate that more than half of eukaryotic proteins possess long intrinsically disordered ...

    Alexander A. Tokmakov, Atsushi Kurotani, Mariko Ikeda in Scientific Reports (2015)

  7. Article

    Open Access

    Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production

    Several plant species can generate enough heat to increase their internal floral temperature above ambient temperature. Among thermogenic plants, Arum concinnatum shows the highest respiration activity during the...

    Yoshihiko Onda, Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai in Scientific Reports (2015)

  8. Article

    Erratum: Genome sequence of the palaeopolyploid soybean

    Nature 463, 178–183 (2010) During resubmission of this work, a paper was published1 that used a comparative genomics approach between soybean and maize to show that a single-base mutation in chromosome 19 acco...

    Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros in Nature (2010)

  9. Article

    Open Access

    Genome sequence of the palaeopolyploid soybean

    Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the...

    Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros in Nature (2010)