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  1. Article

    Open Access

    Recombinant IFN-γ1b Treatment in a Patient with Inherited IFN-γ Deficiency

    Inborn errors of IFN-γ immunity underlie Mendelian susceptibility to mycobacterial disease (MSMD). Twenty-two genes with products involved in the production of, or response to, IFN-γ and variants of which unde...

    Jérémie Rosain, Ayca Kiykim, Alexandre Michev in Journal of Clinical Immunology (2024)

  2. Article

    Open Access

    Harnessing large language models (LLMs) for candidate gene prioritization and selection

    Feature selection is a critical step for translating advances afforded by systems-scale molecular profiling into actionable clinical insights. While data-driven methods are commonly utilized for selecting cand...

    Mohammed Toufiq, Darawan Rinchai in Journal of Translational Medicine (2023)

  3. Article

    Open Access

    Inherited IFNAR1 Deficiency in a Child with Both Critical COVID-19 Pneumonia and Multisystem Inflammatory Syndrome

    Inborn errors of immunity (IEI) and autoantibodies to type I interferons (IFNs) underlie critical COVID-19 pneumonia in at least 15% of the patients, while the causes of multisystem inflammatory syndrome in ch...

    Hassan Abolhassani, Nils Landegren, Paul Bastard in Journal of Clinical Immunology (2022)

  4. Article

    Open Access

    A Novel STK4 Mutation Impairs T Cell Immunity Through Dysregulation of Cytokine-Induced Adhesion and Chemotaxis Genes

    Human serine/threonine kinase 4 (STK4) deficiency is a rare, autosomal recessive genetic disorder leading to combined immunodeficiency; however, the extent to which immune signaling and host defense are impair...

    Andrea Guennoun, Salim Bougarn, Taushif Khan in Journal of Clinical Immunology (2021)

  5. No Access

    Article

    Inherited PD-1 deficiency underlies tuberculosis and autoimmunity in a child

    The pathophysiology of adverse events following programmed cell death protein 1 (PD-1) blockade, including tuberculosis (TB) and autoimmunity, remains poorly characterized. We studied a patient with inherited ...

    Masato Ogishi, Rui Yang, Caner Aytekin, David Langlais, Mathieu Bourgey in Nature Medicine (2021)

  6. Article

    Open Access

    Virome-wide serological profiling reveals association of herpesviruses with obesity

    The relationship between viral infection and obesity has been known for several decades but epidemiological data is limited to only a few viral pathogens. The association between obesity and a wide range of vi...

    Mohammad Rubayet Hasan, Mahbuba Rahman, Taushif Khan, Amira Saeed in Scientific Reports (2021)

  7. Article

    Open Access

    Author Correction: Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Daniele Raimondi, Gabriele Orlando, Rita Pancsa, Taushif Khan in Scientific Reports (2019)

  8. Article

    Open Access

    ProLego: tool for extracting and visualizing topological modules in protein structures

    In protein design, correct use of topology is among the initial and most critical feature. Meticulous selection of backbone topology aids in drastically reducing the structure search space. With ProLego, we pr...

    Taushif Khan, Shailesh Kumar Panday, Indira Ghosh in BMC Bioinformatics (2018)

  9. Article

    Open Access

    Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

    Protein folding is a complex process that can lead to disease when it fails. Especially poorly understood are the very early stages of protein folding, which are likely defined by intrinsic local interactions ...

    Daniele Raimondi, Gabriele Orlando, Rita Pancsa, Taushif Khan in Scientific Reports (2017)