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  1. Article

    Open Access

    A non-methanogenic archaeon within the order Methanocellales

    Serpentinization, a geochemical process found on modern and ancient Earth, provides an ultra-reducing environment that can support microbial methanogenesis and acetogenesis. Several groups of archaea, such as ...

    Shino Suzuki, Shun’ichi Ishii, Grayson L. Chadwick, Yugo Tanaka in Nature Communications (2024)

  2. Article

    Open Access

    Microbial decomposition of biodegradable plastics on the deep-sea floor

    Microbes can decompose biodegradable plastics on land, rivers and seashore. However, it is unclear whether deep-sea microbes can degrade biodegradable plastics in the extreme environmental conditions of the se...

    Taku Omura, Noriyuki Isobe, Takamasa Miura, Shun’ichi Ishii in Nature Communications (2024)

  3. Article

    Open Access

    Non-autotrophic methanogens dominate in anaerobic digesters

    Anaerobic digesters are man-made habitats for fermentative and methanogenic microbes, and are characterized by extremely high concentrations of organics. However, little is known about how microbes adapt to su...

    Atsushi Kouzuma, Maho Tsutsumi, Shun’ichi Ishii, Yoshiyuki Ueno in Scientific Reports (2017)

  4. Article

    Open Access

    Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach

    Microorganisms almost always exist as mixed communities in nature. While the significance of microbial community activities is well appreciated, a thorough understanding about how microbial communities respond...

    Shun’ichi Ishii, Shino Suzuki, Aaron Tenney, Trina M. Norden-Krichmar in Scientific Reports (2015)

  5. Article

    Open Access

    Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site

    Serpentinization, or the aqueous alteration of ultramafic rocks, results in challenging environments for life in continental sites due to the combination of extremely high pH, low salinity and lack of obvious ...

    Shino Suzuki, J. Gijs Kuenen, Kira Schipper, Suzanne van der Velde in Nature Communications (2014)

  6. No Access

    Article

    A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer

    Microbial respiration via extracellular electron transfer (EET) is a ubiquitous reaction that occurs throughout anoxic environments and is a driving force behind global biogeochemical cycling of metals. Here w...

    Shun’ichi Ishii, Shino Suzuki, Trina M. Norden-Krichmar in Nature Communications (2013)

  7. No Access

    Article

    Enhanced electrode-reducing rate during the enrichment process in an air-cathode microbial fuel cell

    The improvement in electricity generation during the enrichment process of a microbial consortium was analyzed using an air-cathode microbial fuel cell (MFC) repeatedly fed with acetate that was originally ino...

    Shun’ichi Ishii, Bruce E. Logan, Yuji Sekiguchi in Applied Microbiology and Biotechnology (2012)

  8. Article

    Open Access

    Microbial Fuel Cells and Microbial Ecology: Applications in Ruminant Health and Production Research

    Microbial fuel cell (MFC) systems employ the catalytic activity of microbes to produce electricity from the oxidation of organic, and in some cases inorganic, substrates. MFC systems have been primarily explor...

    Orianna Bretschger, Jason B. Osterstock, William E. Pinchak in Microbial Ecology (2010)

  9. Article

    Open Access

    Characterization of a filamentous biofilm community established in a cellulose-fed microbial fuel cell

    Microbial fuel cells (MFCs) are devices that exploit microorganisms to generate electric power from organic matter. Despite the development of efficient MFC reactors, the microbiology of electricity generation...

    Shun'ichi Ishii, Takefumi Shimoyama, Yasuaki Hotta, Kazuya Watanabe in BMC Microbiology (2008)