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  1. No Access

    Article

    Inhibiting fatty acid synthesis overcomes colistin resistance

    Treating multidrug-resistant infections has increasingly relied on last-resort antibiotics, including polymyxins, for example colistin. As polymyxins are given routinely, the prevalence of their resistance is ...

    Lindsey A. Carfrae, Kenneth Rachwalski, Shawn French in Nature Microbiology (2023)

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    Article

    A comprehensive guide to dynamic analysis of microbial gene expression using the 3D-printed PFIbox and a fluorescent reporter library

    Temporally resolved assays of bacterial gene expression using printed fluorescence imaging boxes (PFIboxes) are non-destructive, inexpensive and simple to prepare. Herein, we describe a full experimental pipel...

    Shawn French, Amelia Bing Ya Guo, Eric D. Brown in Nature Protocols (2020)

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    Article

    A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

    Antibiotic screens typically rely on growth inhibition to characterize compound bioactivity—an approach that cannot be used to assess the bactericidal activity of antibiotics against bacteria in drug-tolerant ...

    Jonathan M. Stokes, Arnaud Gutierrez, Allison J. Lopatkin, Ian W. Andrews in Nature Methods (2019)

  4. Article

    Open Access

    A macrophage-based screen identifies antibacterial compounds selective for intracellular Salmonella Typhimurium

    Salmonella Typhimurium (S. Tm) establishes systemic infection in susceptible hosts by evading the innate immune response and replicating within host phagocytes. Here, we sought to identify inhibitors of intracell...

    Michael J. Ellis, Caressa N. Tsai, Jarrod W. Johnson, Shawn French in Nature Communications (2019)

  5. No Access

    Article

    Pentamidine sensitizes Gram-negative pathogens to antibiotics and overcomes acquired colistin resistance

    The increasing use of polymyxins1 in addition to the dissemination of plasmid-borne colistin resistance threatens to cause a serious breach in our last line of defence against multidrug-resistant Gram-negative pa...

    Jonathan M. Stokes, Craig R. MacNair, Bushra Ilyas, Shawn French in Nature Microbiology (2017)

  6. No Access

    Article

    Assembly and clustering of natural antibiotics guides target identification

    A retrobiosynthetic algorithm that relates known antibiotics by the similarities of their biosynthetic pathways to cluster them into distinct classes. Focusing on the telomycins helps to define the mechanism o...

    Chad W Johnston, Michael A Skinnider, Chris A Dejong in Nature Chemical Biology (2016)