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  1. Article

    Open Access

    Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves

    The objective of this study was to evaluate the impact of dietary zinc supplementation in pre-weaned dairy calves on the phenotypic antimicrobial resistance (AMR) of fecal commensal bacteria. A repository of f...

    Katie Y. Lee, Edward R. Atwill, Xunde Li, Hillary R. Feldmann in Scientific Reports (2024)

  2. Article

    Open Access

    Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome

    The goal of this study was to assess the microbial ecology and diversity present in the uterus of post-partum dairy cows with and without metritis from 24 commercial California dairy farms using shotgun metage...

    Carl Basbas, Adriana Garzon, Cory Schlesener, Machteld van Heule in Animal Microbiome (2023)

  3. Article

    Open Access

    Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms

    The goals of this study were to evaluate factors affecting recovery and antimicrobial resistance (AMR) in intrauterine E. coli in post-partum dairy cows with and without metritis from commercial California dairy ...

    Carl Basbas, Adriana Garzon, Noelia Silva-del-Rio, Barbara A. Byrne in Scientific Reports (2022)

  4. Article

    Open Access

    Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line

    Microbiota play important roles in the gastrointestinal tract (GIT) of dairy cattle as the communities are responsible for host health, growth, and production performance. However, a systematic characterizatio...

    Lei Zhao, Xunde Li, Edward R. Atwill, Sharif S. Aly in BMC Microbiology (2022)

  5. Article

    Open Access

    Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient

    The Intraclass Correlation Coefficient (ICC) is commonly used to estimate the similarity between quantitative measures obtained from different sources. Overdispersed data is traditionally transformed so that l...

    Sharif S Aly, Jianyang Zhao, Ben Li, Jiming Jiang in SpringerPlus (2014)

  6. Article

    Open Access

    A randomized controlled trial on preweaning morbidity, growth and mortality in Holstein heifers fed a lacteal-derived colostrum replacer or pooled maternal colostrum

    The objective of this randomized controlled trial was to determine the effect of feeding a commercial lacteal-derived colostrum replacer (CR) or pooled maternal colostrum (MC) on preweaning morbidity, growth a...

    Sharif S Aly, Patrick Pithua, John D Champagne, Deborah M Haines in BMC Veterinary Research (2013)

  7. Article

    Open Access

    Modeling highly pathogenic avian influenza transmission in wild birds and poultry in West Bengal, India

    Wild birds are suspected to have played a role in highly pathogenic avian influenza (HPAI) H5N1 outbreaks in West Bengal. Cluster analysis showed that H5N1 was introduced in West Bengal at least 3 times betwee...

    Pranav S. Pandit, David A. Bunn, Satish A. Pande, Sharif S. Aly in Scientific Reports (2013)