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  1. Article

    Open Access

    Intercellular communication atlas reveals Oprm1 as a neuroprotective factor for retinal ganglion cells

    Previous studies of neuronal survival have primarily focused on identifying intrinsic mechanisms controlling the process. This study explored how intercellular communication contributes to retinal ganglion cel...

    Cheng Qian, Ying **n, Cheng Qi, Hui Wang, Bryan C. Dong in Nature Communications (2024)

  2. Article

    Open Access

    Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina

    Following acute retinal damage, zebrafish possess the ability to regenerate all neuronal subtypes through Müller glia (MG) reprogramming and asymmetric cell division that produces a multipotent Müller glia-der...

    Pin Lyu, Maria Iribarne, Dmitri Serjanov, Yijie Zhai, Thanh Hoang in Nature Communications (2023)

  3. Article

    Open Access

    A clock-dependent brake for rhythmic arousal in the dorsomedial hypothalamus

    Circadian clocks generate rhythms of arousal, but the underlying molecular and cellular mechanisms remain unclear. In Drosophila, the clock output molecule WIDE AWAKE (WAKE) labels rhythmic neural networks and cy...

    Qiang Liu, Benjamin J. Bell, Dong Won Kim, Sang Soo Lee in Nature Communications (2023)

  4. No Access

    Article

    Ptbp1 deletion does not induce astrocyte-to-neuron conversion

    Thanh Hoang, Dong Won Kim, Haley Appel, Manabu Ozawa, Sika Zheng, Juhyun Kim in Nature (2023)

  5. Article

    Open Access

    Cell-specific regulation of gene expression using splicing-dependent frameshifting

    Precise and reliable cell-specific gene delivery remains technically challenging. Here we report a splicing-based approach for controlling gene expression whereby separate translational reading frames are coup...

    Jonathan P. Ling, Alexei M. Bygrave, Clayton P. Santiago in Nature Communications (2022)

  6. Article

    Open Access

    In vivo base editing rescues cone photoreceptors in a mouse model of early-onset inherited retinal degeneration

    Leber congenital amaurosis (LCA) is the most common cause of inherited retinal degeneration in children. LCA patients with RPE65 mutations show accelerated cone photoreceptor dysfunction and death, resulting in e...

    Elliot H. Choi, Susie Suh, Andrzej T. Foik, Henri Leinonen in Nature Communications (2022)

  7. Article

    Open Access

    Author Correction: The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

    Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang in Nature Communications (2022)

  8. Article

    Open Access

    Author Correction: A potential role for somatostatin signaling in regulating retinal neurogenesis

    Kurt Weir, Dong Won Kim, Seth Blackshaw in Scientific Reports (2021)

  9. Article

    Open Access

    A potential role for somatostatin signaling in regulating retinal neurogenesis

    Neuropeptides have been reported to regulate progenitor proliferation and neurogenesis in the central nervous system. However, these studies have typically been conducted using pharmacological agents in ex viv...

    Kurt Weir, Dong Won Kim, Seth Blackshaw in Scientific Reports (2021)

  10. Article

    Open Access

    Temperature and species-dependent regulation of browning in retrobulbar fat

    Retrobulbar fat deposits surround the posterior retina and optic nerve head, but their function and origin are obscure. We report that mouse retrobulbar fat is a neural crest-derived tissue histologically and ...

    Fatemeh Rajaii, Dong Won Kim, Jianbo Pan, Nicholas R. Mahoney in Scientific Reports (2021)

  11. Article

    Open Access

    The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

    The hypothalamus is a central regulator of many innate behaviors essential for survival, but the molecular mechanisms controlling hypothalamic patterning and cell fate specification are poorly understood. To i...

    Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang in Nature Communications (2020)

  12. Article

    Open Access

    ASCOT identifies key regulators of neuronal subtype-specific splicing

    Public archives of next-generation sequencing data are growing exponentially, but the difficulty of marshaling this data has led to its underutilization by scientists. Here, we present ASCOT, a resource that u...

    Jonathan P. Ling, Christopher Wilks, Rone Charles in Nature Communications (2020)

  13. Article

    Open Access

    Tissue- and Species-Specific Patterns of RNA metabolism in Post-Mortem Mammalian Retina and Retinal Pigment Epithelium

    Accurate analysis of gene expression in human tissues using RNA sequencing is dependent on the quality of source material. One major source of variation in mRNA quality is post-mortem time. While it is known t...

    Les Kallestad, Seth Blackshaw, Ahmad M. Khalil, Krzysztof Palczewski in Scientific Reports (2019)

  14. Article

    Open Access

    ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration

    Age-related macular degeneration (AMD) is a significant cause of vision loss in the elderly. The extent to which epigenetic changes regulate AMD progression is unclear. Here we globally profile chromatin acces...

    Jie Wang, Cristina Zibetti, Peng Shang, Srinivasa R. Sripathi in Nature Communications (2018)

  15. Article

    Correction: Corrigendum: Lhx6-positive GABA-releasing neurons of the zona incerta promote sleep

    Nature 548, 582–587 (2017); doi:10.1038/nature23663 In this Letter, the surname of author Vassilis Pachnis was misspelled as ‘Pachinis’. The original Letter has been corrected online.

    Kai Liu, Juhyun Kim, Dong Won Kim, Yi Stephanie Zhang, Hechen Bao, Myrto Denaxa in Nature (2017)

  16. No Access

    Article

    Lhx6-positive GABA-releasing neurons of the zona incerta promote sleep

    GABAergic Lhx6+ neurons in the ventral zona incerta promote both rapid eye movement and non-rapid eye movement sleep and inhibit the activity of wake-promoting GABAergic and Hcrt+ neurons of the lateral hypothala...

    Kai Liu, Juhyun Kim, Dong Won Kim, Yi Stephanie Zhang, Hechen Bao, Myrto Denaxa in Nature (2017)

  17. Article

    Open Access

    The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states

    Despite their abundance, the molecular functions of long non-coding RNAs in mammalian nervous systems remain poorly understood. Here we show that the long non-coding RNA, NEAT1, directly modulates neuronal exc...

    Guy Barry, James A. Briggs, Do Won Hwang, Sam P. Nayler in Scientific Reports (2017)

  18. Article

    Open Access

    Multiple intrinsic factors act in concert with Lhx2 to direct retinal gliogenesis

    Müller glia (MG) are the principal glial cell type in the vertebrate retina. Recent work has identified the LIM homeodomain factor encoding gene Lhx2 as necessary for both Notch signaling and MG differentiation i...

    Jimmy de Melo, Brian S. Clark, Seth Blackshaw in Scientific Reports (2016)