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  1. Article

    Correction: Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

    Nat. Genet. 47, 367–372 (2015); published online 2 March 2015; corrected after print 5 May 2015 In the version of this article initially published, author Manasa Ramakrishna was omitted from the author list. T...

    Colin S Cooper, Rosalind Eeles, David C Wedge, Peter Van Loo in Nature Genetics (2015)

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    Article

    Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

    Colin Cooper and colleagues report genome-wide sequences of multiple samples of multifocal cancer and morphologically normal tissue from the prostates of three men. They found high levels of mutations in morph...

    Colin S Cooper, Rosalind Eeles, David C Wedge, Peter Van Loo in Nature Genetics (2015)

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    Article

    RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

    Peter Campbell, Mel Greaves and colleagues use exome and whole-genome sequencing to characterize somatic mutations in childhood acute lymphoblastic leukemias with the ETV6-RUNX1 fusion gene. They find that RAG-me...

    Elli Papaemmanuil, Inmaculada Rapado, Yilong Li, Nicola E Potter in Nature Genetics (2014)

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    Article

    Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma

    Andrew Futreal and colleagues identify the major cartilage collagen gene COL2A1 as a frequent target of somatic mutation in chondrosarcoma. The mutation patterns are consistent with selection for variants likely ...

    Patrick S Tarpey, Sam Behjati, Susanna L Cooke, Peter Van Loo in Nature Genetics (2013)

  5. Article

    Correction: Corrigendum: Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

    Nat. Genet. 38, 1242–1244 (2006); published online 1 October 2006; corrected after print 6 June 2011 In the version of this article initially published, the author Andrew Bastawrous was omitted from the author...

    Patrick Tarpey, Shery Thomas, Nagini Sarvananthan, Uma Mallya in Nature Genetics (2011)

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    Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer

    Andrew Futreal and colleagues report inactivating somatic mutations in the histone lysine demethylase gene UTX in human cancers, including multiple myelomas, esophageal squamous carcinomas, renal clear cell carci...

    Gijs van Haaften, Gillian L Dalgliesh, Helen Davies, Lina Chen in Nature Genetics (2009)

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    A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

    Tarpey et al. carry out a large-scale systematic sequencing of the majority of X-chromosome coding exons from 208 families with multiple individuals with mental retardation and a pattern of transmission compatibl...

    Patrick S Tarpey, Raffaella Smith, Erin Pleasance, Annabel Whibley in Nature Genetics (2009)

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    Article

    X-linked protocadherin 19 mutations cause female-limited epilepsy and cognitive impairment

    Epilepsy and mental retardation limited to females (EFMR) is a disorder with an X-linked mode of inheritance and an unusual expression pattern. Disorders arising from mutations on the X chromosome are typicall...

    Leanne M Dibbens, Patrick S Tarpey, Kim Hynes, Marta A Bayly in Nature Genetics (2008)

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    Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

    Human cancers often carry many somatically acquired genomic rearrangements, some of which may be implicated in cancer development. However, conventional strategies for characterizing rearrangements are laborio...

    Peter J Campbell, Philip J Stephens, Erin D Pleasance, Sarah O'Meara in Nature Genetics (2008)

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    Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation

    Nonsense-mediated mRNA decay (NMD) is of universal biological significance1,2,3. It has emerged as an important global RNA, DNA and translation regulatory pathway4. By systematically sequencing 737 genes (annotat...

    Patrick S Tarpey, F Lucy Raymond, Lam S Nguyen, Jayson Rodriguez in Nature Genetics (2007)

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    Article

    Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

    Idiopathic congenital nystagmus is characterized by involuntary, periodic, predominantly horizontal oscillations of both eyes. We identified 22 mutations in FRMD7 in 26 families with X-linked idiopathic congenita...

    Patrick Tarpey, Shery Thomas, Nagini Sarvananthan, Uma Mallya in Nature Genetics (2006)

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    Article

    A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer

    We examined the coding sequence of 518 protein kinases, ∼1.3 Mb of DNA per sample, in 25 breast cancers. In many tumors, we detected no somatic mutations. But a few had numerous somatic mutations with distinct...

    Philip Stephens, Sarah Edkins, Helen Davies, Chris Greenman, Charles Cox in Nature Genetics (2005)