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Promoter capture Hi-C-based identification of recurrent noncoding mutations in colorectal cancer

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  1. Article

    Open Access

    Dissecting the pathogenic effects of smoking and its hallmarks in blood DNA methylation on colorectal cancer risk

    Tobacco smoking is suggested as a risk factor for colorectal cancer (CRC), but the complex relationship and the potential pathway are not fully understood.

    Xuan Zhou, Qian **ao, Fangyuan Jiang, **g Sun, Lijuan Wang in British Journal of Cancer (2023)

  2. Article

    Open Access

    A genome-wide gene-environment interaction study of breast cancer risk for women of European ancestry

    Genome-wide studies of gene–environment interactions (G×E) may identify variants associated with disease risk in conjunction with lifestyle/environmental exposures. We conducted a genome-wide G×E analysis of ~...

    Pooja Middha, **aoliang Wang, Sabine Behrens, Manjeet K. Bolla in Breast Cancer Research (2023)

  3. Article

    Open Access

    Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry

    Low-frequency variants play an important role in breast cancer (BC) susceptibility. Gene-based methods can increase power by combining multiple variants in the same gene and help identify target genes.

    Stefanie H. Mueller, Alvina G. Lai, Maria Valkovskaya in Genome Medicine (2023)

  4. Article

    Open Access

    Chemotherapy-related hyperbilirubinemia in pediatric acute lymphoblastic leukemia: a genome-wide association study from the AIEOP-BFM ALL study group

    Characterization of clinical phenotypes in context with tumor and host genomic information can aid in the development of more effective and less toxic risk-adapted and targeted treatment strategies. To analyze...

    Stefanie V. Junk, Elke Schaeffeler in Journal of Experimental & Clinical Cancer … (2023)

  5. Article

    Open Access

    Genetic risk scores may compound rather than solve the issue of prostate cancer overdiagnosis

    Rachel H. Horton, Malcolm G. Dunlop, Richard S. Houlston in British Journal of Cancer (2023)

  6. Article

    Open Access

    Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features

    The value of genome-wide over targeted driver analyses for predicting clinical outcomes of cancer patients is debated. Here, we report the whole-genome sequencing of 485 chronic lymphocytic leukemia patients e...

    Pauline Robbe, Kate E. Ridout, Dimitrios V. Vavoulis, Helene Dréau in Nature Genetics (2022)

  7. Article

    Open Access

    Phenome-wide association study (PheWAS) of colorectal cancer risk SNP effects on health outcomes in UK Biobank

    Associations between colorectal cancer (CRC) and other health outcomes have been reported, but these may be subject to biases, or due to limitations of observational studies.

    **aomeng Zhang, Xue Li, Yazhou He, Philip J. Law in British Journal of Cancer (2022)

  8. Article

    Open Access

    Lack of an association between gallstone disease and bilirubin levels with risk of colorectal cancer: a Mendelian randomisation analysis

    Epidemiological studies of the relationship between gallstone disease and circulating levels of bilirubin with risk of develo** colorectal cancer (CRC) have been inconsistent. To address possible confounding...

    Richard Culliford, Alex J. Cornish, Philip J. Law in British Journal of Cancer (2021)

  9. Article

    Open Access

    Genetically predicted physical activity levels are associated with lower colorectal cancer risk: a Mendelian randomisation study

    We conducted a Mendelian randomisation (MR) study to investigate whether physical activity (PA) causes a reduction of colorectal cancer risk and to understand the contributions of effects mediated through chan...

    **aomeng Zhang, Evropi Theodoratou, Xue Li in British Journal of Cancer (2021)

  10. Article

    Open Access

    Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study

    The aetiology of glioma is poorly understood. Summary data from genome-wide association studies (GWAS) can be used in a Mendelian randomisation (MR) phenome-wide association study (PheWAS) to search for glioma...

    Charlie N. Saunders, Alex J. Cornish, Ben Kinnersley in British Journal of Cancer (2021)

  11. Article

    Open Access

    An enhanced genetic model of relapsed IGH-translocated multiple myeloma evolutionary dynamics

    Most patients with multiple myeloma (MM) die from progressive disease after relapse. To advance our understanding of MM evolution mechanisms, we performed whole-genome sequencing of 80 IGH-translocated tumour-nor...

    Phuc H. Hoang, Alex J. Cornish, Amy L. Sherborne, Daniel Chubb in Blood Cancer Journal (2020)

  12. Article

    Open Access

    Impact of mitochondrial DNA mutations in multiple myeloma

    Phuc H. Hoang, Alex J. Cornish, Daniel Chubb, Graham Jackson in Blood Cancer Journal (2020)

  13. Article

    Open Access

    Transcriptome-wide association study of multiple myeloma identifies candidate susceptibility genes

    While genome-wide association studies (GWAS) of multiple myeloma (MM) have identified variants at 23 regions influencing risk, the genes underlying these associations are largely unknown. To identify candidate...

    Molly Went, Ben Kinnersley, Amit Sud, David C. Johnson, Niels Weinhold in Human Genomics (2019)

  14. Article

    Open Access

    Mutational processes contributing to the development of multiple myeloma

    To gain insight into multiple myeloma (MM) tumorigenesis, we analyzed the mutational signatures in 874 whole-exome and 850 whole-genome data from the CoMMpass Study. We identified that coding and non-coding re...

    Phuc H. Hoang, Alex J. Cornish, Sara E. Dobbins, Martin Kaiser in Blood Cancer Journal (2019)

  15. Article

    Open Access

    Types of second primary cancers influence survival in chronic lymphocytic and hairy cell leukemia patients

    Guoqiao Zheng, Subhayan Chattopadhyay, Amit Sud, Kristina Sundquist in Blood Cancer Journal (2019)

  16. Article

    Publisher Correction: Cancer genetics, precision prevention and a call to action

    In the version of this article originally published, there was an error in the second-to-last sentence of the abstract. In this sentence, the final phrase “to identify carriers of first-wave gene mutation carr...

    Clare Turnbull, Amit Sud, Richard S. Houlston in Nature Genetics (2019)

  17. Article

    Open Access

    Genetic correlation between multiple myeloma and chronic lymphocytic leukaemia provides evidence for shared aetiology

    The clustering of different types of B-cell malignancies in families raises the possibility of shared aetiology. To examine this, we performed cross-trait linkage disequilibrium (LD)-score regression of multip...

    Molly Went, Amit Sud, Helen Speedy, Nicola J. Sunter, Asta Försti in Blood Cancer Journal (2018)

  18. Article

    Open Access

    Influence of obesity-related risk factors in the aetiology of glioma

    Obesity and related factors have been implicated as possible aetiological factors for the development of glioma in epidemiological observation studies. We used genetic markers in a Mendelian randomisation fram...

    Linden Disney-Hogg, Amit Sud, Philip J. Law, Alex J. Cornish in British Journal of Cancer (2018)

  19. Article

    Open Access

    Constitutional mutation in CDKN2A is associated with long term survivorship in multiple myeloma: a case report

    Multiple Myeloma is a cancer of plasma cells associated with significantly reduced survival. Long term survivorship from myeloma is very rare and despite advances in its treatment the disease is generally cons...

    Vallari Shah, Kevin D. Boyd, Richard S. Houlston, Martin F. Kaiser in BMC Cancer (2017)

  20. Article

    Correction: Corrigendum: Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer

    Nat. Genet. 46, 736–741 (2014); published online 1 June 2014; corrected after print 23 January 2017 In the version of this article initially published, the name of author Florence Le Calvez-Kelm appeared incor...

    Yufei Wang, James D McKay, Thorunn Rafnar, Zhaoming Wang in Nature Genetics (2017)

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