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  1. Article

    Open Access

    Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity

    It is apparent that genomes harbor much structural variation that is largely undetected for technical reasons. Such variation can cause artifacts when short-read sequencing data are mapped to a reference genom...

    Benjamin Jaegle, Rahul Pisupati, Luz Mayela Soto-Jiménez, Robin Burns in Genome Biology (2023)

  2. Article

    Open Access

    Diversity and evolution of the repetitive genomic content in Cannabis sativa

    The repetitive content of the genome, once considered to be “junk DNA”, is in fact an essential component of genomic architecture and evolution. In this study, we used the genomes of three varieties of Cannabis s...

    Rahul Pisupati, Daniela Vergara, Nolan C. Kane in BMC Genomics (2018)

  3. Article

    Open Access

    Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica

    Allopolyploids contain genomes composed of more than two complete sets of chromosomes that originate from at least two species. Allopolyploidy has been suggested as an important evolutionary mechanism that can...

    Keisha D. Carlson, Noe Fernandez-Pozo, Aureliano Bombarely, Rahul Pisupati in BMC Genomics (2017)