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  1. Article

    Open Access

    msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data

    DNA methylation is an important epigenetic modification that is known to regulate gene expression. Whole-genome bisulfite sequencing (WGBS) is a powerful method for studying cytosine methylation in a whole gen...

    Heesun Kim, Mikang Sim, Nayoung Park, Kisang Kwon, Junyoung Kim in BMC Bioinformatics (2022)

  2. Article

    Open Access

    TAMA: improved metagenomic sequence classification through meta-analysis

    Microorganisms are important occupants of many different environments. Identifying the composition of microbes and estimating their abundance promote understanding of interactions of microbes in environmental ...

    Mikang Sim, Jongin Lee, Daehwan Lee, Daehong Kwon, Jaebum Kim in BMC Bioinformatics (2020)

  3. Article

    Open Access

    mySyntenyPortal: an application package to construct websites for synteny block analysis

    Advances in sequencing technologies have facilitated large-scale comparative genomics based on whole genome sequencing. Constructing and investigating conserved genomic regions among multiple species (called s...

    Jongin Lee, Daehwan Lee, Mikang Sim, Daehong Kwon, Juyeon Kim in BMC Bioinformatics (2018)

  4. Article

    Open Access

    Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data

    Rapid and cost effective production of large-scale genome data through next-generation sequencing has enabled population-level studies of various organisms to identify their genotypic differences and phenotypi...

    Daehwan Lee, Dajeong Lim, Daehong Kwon, Juyeon Kim, Jongin Lee in Scientific Reports (2017)

  5. No Access

    Article

    A clustering method for next-generation sequences of bacterial genomes through multiomics data map**

    With various ‘omics’ data becoming available recently, new challenges and opportunities are provided for researches on the assembly of next-generation sequences. As an attempt to utilize novel opportunities, w...

    Ho-Sik Seok, Mikang Sim, Daehwan Lee, Jaebum Kim in Genes & Genomics (2014)