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  1. Article

    Open Access

    Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure

    Climate changes significantly impact greenhouse gas emissions from wetland soil. Specifically, wetland soil may be exposed to oxygen (O2) during droughts, or to sulfate (SO42-) as a result of sea level rise. How ...

    Dongyu Wang, Pieter Candry, Kristopher A. Hunt in npj Biofilms and Microbiomes (2024)

  2. Article

    Open Access

    Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

    Current understanding of the carbon cycle in methanogenic environments involves trophic interactions such as interspecies H2 transfer between organotrophs and methanogens. However, many metabolic processes are th...

    Masaru K. Nobu, Takashi Narihiro, Ran Mei, Yoichi Kamagata, Patrick K. H. Lee in Microbiome (2020)

  3. No Access

    Reference Work Entry In depth

    Introduction to Microbial Hydrocarbon Production: Bioenergetics

    Microorganisms play an essential role in the global carbon budget with methanogenesis being a significant global source of methane. The ability to produce hydrocarbons other than methane is widespread among mi...

    Bernhard Schink, Michael J. McInerney, Tori Hoehler in Biogenesis of Hydrocarbons (2019)

  4. No Access

    Reference Work Entry In depth

    Environmental Constraints That Limit Methanogenesis

    Methanogens are active in many different ecosystems, including habitats with biologically-derived organic matter as substrates such as aquatic sediments, wetlands, agricultural or natural soils subject to inun...

    Tori Hoehler, Nathaniel A. Losey, Robert P. Gunsalus in Biogenesis of Hydrocarbons (2019)

  5. No Access

    Reference Work Entry In depth

    Methanogens: Syntrophic Metabolism

    Syntrophy is a mutualistic interaction in which two metabolically different types of microorganisms are linked by the need to keep metabolites exchanged between the two partners at low concentrations to make t...

    Jessica R. Sieber, Michael J. McInerney, Nicolai Müller in Biogenesis of Hydrocarbons (2019)

  6. No Access

    Living Reference Work Entry In depth

    Environmental Constraints that Limit Methanogenesis

    Methanogens are active in many different ecosystems, including habitats with biologically-derived organic matter as substrates such as aquatic sediments, wetlands, agricultural or natural soils subject to inun...

    Tori Hoehler, Nathaniel A. Losey, Robert P. Gunsalus in Biogenesis of Hydrocarbons

  7. No Access

    Living Reference Work Entry In depth

    Methanogens: Syntrophic Metabolism

    Syntrophy is a mutualistic interaction in which two metabolically different types of microorganisms are linked by the need to keep metabolites exchanged between the two partners at low concentrations to make t...

    Jessica R. Sieber, Michael J. McInerney, Nicolai Müller in Biogenesis of Hydrocarbons

  8. No Access

    Living Reference Work Entry In depth

    Introduction to Microbial Hydrocarbon Production: Bioenergetics

    Microorganisms play an essential role in the global carbon budget with methanogenesis being a significant global source of methane. The ability to produce hydrocarbons other than methane is widespread among mi...

    Bernhard Schink, Michael J. McInerney, Tori Hoehler in Biogenesis of Hydrocarbons

  9. No Access

    Reference Work Entry In depth

    Use of Biosurfactants in Oil Recovery

    Biosurfactant-mediated oil recovery has the potential to recover large amounts of crude oil that remain entrapped in oil reservoirs after current oil recovery technologies reach their economic limit. Lipopepti...

    Guoqiang Li, Michael J. McInerney in Consequences of Microbial Interactions wit… (2017)

  10. Article

    Open Access

    Complete genome sequence of Methanospirillum hungatei type strain JF1

    Methanospirillum hungatei strain JF1 (DSM 864) is a methane-producing archaeon and is the type species of the genus Methanospirillum, which belongs to the family Methanospirillaceae withi...

    Robert P. Gunsalus, Lauren E. Cook, Bryan Crable in Standards in Genomic Sciences (2016)

  11. No Access

    Living Reference Work Entry In depth

    Use of Biosurfactants in Oil Recovery

    Biosurfactant-mediated oil recovery has the potential to recover large amounts of crude oil that remain entrapped in oil reservoirs after current oil recovery technologies reach their economic limit. Lipopepti...

    Guoqiang Li, Michael J. McInerney in Consequences of Microbial Interactions wit…

  12. Article

    Open Access

    Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOBT)

    Syntrophobacter fumaroxidans strain MPOBT is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of p...

    Caroline M. Plugge, Anne M. Henstra, Petra Worm in Standards in Genomic Sciences (2012)

  13. No Access

    Article

    Biosurfactant-producing Bacillus are present in produced brines from Oklahoma oil reservoirs with a wide range of salinities

    Nine wells producing from six different reservoirs with salinities ranging from 2.1% to 15.9% were surveyed for presence of surface-active compounds and biosurfactant-producing microbes. Degenerate primers wer...

    D. Randall Simpson, Nisha Ravi Natraj in Applied Microbiology and Biotechnology (2011)

  14. No Access

    Article

    Basis for formulating biosurfactant mixtures to achieve ultra low interfacial tension values against hydrocarbons

    Biosurfactants could potentially replace or be used in conjunction with synthetic surfactants to provide for more cost-effective subsurface remediation. The design of surfactant formulations that are effective...

    Noha H. Youssef, Thu Nguyen in Journal of Industrial Microbiology & Biote… (2007)

  15. No Access

    Article

    Anaerobic microbial metabolism can proceed close to thermodynamic limits

    Many fermentative bacteria obtain energy for growth by reactions in which the change in free energy (ΔG′) is less than that needed to synthesize ATP1,2,3,4. These bacteria couple substrate metabolism directly to ...

    Bradley E. Jackson, Michael J. McInerney in Nature (2002)

  16. No Access

    Article

    Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium

    A new, phylogenetically distinct, dissimilatory, Fe(III)-reducing bacterium was isolated from surface sediment of a hydrocarbon-contaminated ditch. The isolate, designated strain PAL-1, was an obligately anae...

    F. Caccavo Jr., John D. Coates, Ramon A. Rossello-Mora in Archives of Microbiology (1996)

  17. No Access

    Article

    Microbial control of hydrogen sulfide production in a porous medium

    The ability of a sulfide- and glutaraldehyde-tolerant strain ofThiobacillus denitrificans (strain F) to control sulfide production in an experimental system of cores and formation water from the Redfield, Iowa na...

    Michael J. McInerney, Neil Q. Wofford in Applied Biochemistry and Biotechnology (1996)

  18. No Access

    Article

    Mechanisms of intrinsic bioremediation of gas condensate hydrocarbons in saturated soil

    The addition of gas condensate hydrocarbons to saturated soil from a gas production site stimulated sulfate reduction under anaerobic and oxygen-limiting conditions, and nitrate and Fe(III) reduction under oxy...

    Abhijeet P. Borole, Kerry L. Sublette in Applied Biochemistry and Biotechnology (1996)

  19. No Access

    Chapter

    Microbial Control of Hydrogen Sulfide Production in a Porous Medium

    The ability of a sulfide-and glutaraldehyde-tolerant strain of Thiobacillus denitrificans (strain F) to control sulfide production in an experimental system of cores and formation water from the Redfield, Iowa na...

    Michael J. Mcinerney, Neil Q. Wofford in Seventeenth Symposium on Biotechnology for… (1996)

  20. No Access

    Chapter

    Mechanisms of Intrinsic Bioremediation of Gas Condensate Hydrocarbons in Saturated Soil

    The addition of gas condensate hydrocarbons to saturated soil from a gas production site stimulated sulfate reduction under anaerobic and oxygen-limiting conditions, and nitrate and Fe(III) reduction under oxy...

    Abhijeet P. Borole, Kerry L. Sublette in Seventeenth Symposium on Biotechnology for… (1996)

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