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  1. Article

    Open Access

    AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

    Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable whole genome sequencing, in silico approaches to assessing AMR gene content can be used to detect known resista...

    Michael Feldgarden, Vyacheslav Brover, Narjol Gonzalez-Escalona… in Scientific Reports (2021)

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  2. Article

    Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

    Dawn Ciulla, Georgia Giannoukos, Ashlee Earl, Michael Feldgarden… in Genome Biology (2010)

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  3. No Access

    Chapter

    Resistance in Reservoirs and Human Commensals

    The role of commensal bacteria in the spread of antibiotic resistance is recognized as a vital component in understanding how to preserve the power of antibiotics. Excepting tuberculosis, the majority of bacte...

    Michael Feldgarden in Antimicrobial Resistance in Develo** Countries (2010)

  4. No Access

    Article

    Haplotype Diversity in “Source-Sink” Dynamics of Escherichia coli Urovirulence

    FimH, the mannose-specific, type 1 fimbrial adhesin of Escherichia coli, acquires amino acid replacements adaptive in extraintestinal niches (the genitourinary tract) but detrimental in the main habitat (the larg...

    Sujay Chattopadhyay, Michael Feldgarden… in Journal of Molecular Evolution (2007)