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  1. Article

    Human genetics special issue on computational molecular medicine

    Rachel Karchin, Melissa S. Cline in Human Genetics (2015)

  2. Article

    Open Access

    A comparative encyclopedia of DNA elements in the mouse genome

    The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater in...

    Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Weisheng Wu, Tyrone Ryba in Nature (2014)

  3. Article

    Open Access

    Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

    The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) offers interactive visualization and exploration of TCGA genomic, phenotypic and clinical d...

    Melissa S. Cline, Brian Craft, Teresa Swatloski, Mary Goldman in Scientific Reports (2013)

  4. Article

    An encyclopedia of mouse DNA elements (Mouse ENCODE)

    To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed fo...

    John A Stamatoyannopoulos, Michael Snyder, Ross Hardison, Bing Ren in Genome Biology (2012)

  5. No Access

    Article

    Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy

    Myotonic dystrophy is a CUG repeat expansion disease and mice deficient in MBNL1, an RNA binding protein, show many characteristics of the disease. Comparison of gene expression profiles of two mouse models of...

    Hongqing Du, Melissa S Cline, Robert J Osborne in Nature Structural & Molecular Biology (2010)

  6. No Access

    Article

    Understanding genome browsing

    How can genome browsers help researchers to infer biological knowledge from data that might be misleading?

    Melissa S Cline, W James Kent in Nature Biotechnology (2009)

  7. No Access

    Article

    Integration of biological networks and gene expression data using Cytoscape

    Cytoscape is a free software package for visualizing, modeling and analyzing molecular and genetic interaction networks. This protocol explains how to use Cytoscape to analyze the results of mRNA expression pr...

    Melissa S Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky in Nature Protocols (2007)