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Releasing uncurated datasets is essential for reproducible phylogenomics

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  1. Article

    Open Access

    An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

    Most diversity in the eukaryotic tree of life is represented by microbial eukaryotes, which is a polyphyletic group also referred to as protists. Among the protists, currently sequenced genomes and transcripto...

    Henning Onsbring, Alexander K. Tice, Brandon T. Barton, Matthew W. Brown in BMC Genomics (2020)

  2. Article

    Open Access

    Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia

    Unicellular protozoa that encyst individually upon starvation evolved at least eight times into organisms that instead form multicellular fruiting bodies with spores. The Dictyostelia are the largest and most ...

    Hajara M. Lawal, Christina Schilde, Koryu Kin, Matthew W. Brown in Scientific Reports (2020)

  3. Article

    Open Access

    Integrated analysis of multiple receptor tyrosine kinases identifies Axl as a therapeutic target and mediator of resistance to sorafenib in hepatocellular carcinoma

    Aberrant activation of Axl is implicated in the progression of hepatocellular carcinoma (HCC). We explored the biologic significance and preclinical efficacy of Axl inhibition as a therapeutic strategy in sora...

    David J. Pinato, Matthew W. Brown, Sebastian Trousil in British Journal of Cancer (2019)

  4. Article

    Open Access

    Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

    Acanthamoebidae is a “family” level amoebozoan group composed of the genera Acanthamoeba, Protacanthamoeba, and very recently Luapeleamoeba. This clade of amoebozoans has received considerable attention from the ...

    Alexander K. Tice, Lora L. Shadwick, Anna Maria Fiore-Donno in Biology Direct (2016)

  5. Article

    Open Access

    Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae

    Nucleomorphs are residual nuclei derived from eukaryotic endosymbionts in chlorarachniophyte and cryptophyte algae. The endosymbionts that gave rise to nucleomorphs and plastids in these two algal groups were ...

    Goro Tanifuji, Naoko T Onodera, Matthew W Brown, Bruce A Curtis in BMC Genomics (2014)

  6. Article

    Open Access

    The Capsaspora genome reveals a complex unicellular prehistory of animals

    To reconstruct the evolutionary origin of multicellular animals from their unicellular ancestors, the genome sequences of diverse unicellular relatives are essential. However, only the genome of the choanoflag...

    Hiroshi Suga, Zehua Chen, Alex de Mendoza, Arnau Sebé-Pedrós in Nature Communications (2013)

  7. Article

    Open Access

    Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes

    Elongation factor-1α (EF-1α) and elongation factor-like (EFL) proteins are functionally homologous to one another, and are core components of the eukaryotic translation machinery. The patchy distribution of th...

    Ryoma Kamikawa, Matthew W Brown, Yuki Nishimura, Yoshihiko Sako in BMC Evolutionary Biology (2013)