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  1. No Access

    Article

    Releasing uncurated datasets is essential for reproducible phylogenomics

    Eric D. Salomaki, Laura Eme, Matthew W. Brown, Martin Kolisko in Nature Ecology & Evolution (2020)

  2. Article

    Open Access

    An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

    Most diversity in the eukaryotic tree of life is represented by microbial eukaryotes, which is a polyphyletic group also referred to as protists. Among the protists, currently sequenced genomes and transcripto...

    Henning Onsbring, Alexander K. Tice, Brandon T. Barton, Matthew W. Brown in BMC Genomics (2020)

  3. Article

    Open Access

    Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia

    Unicellular protozoa that encyst individually upon starvation evolved at least eight times into organisms that instead form multicellular fruiting bodies with spores. The Dictyostelia are the largest and most ...

    Hajara M. Lawal, Christina Schilde, Koryu Kin, Matthew W. Brown in Scientific Reports (2020)

  4. No Access

    Article

    A genetic toolbox for marine protists

    A resource of detailed DNA delivery and expression protocols for marine protists will enable new studies to understand the fundamental and ancestral features of eukaryotic cells.

    Matthew W. Brown, Alexander K. Tice in Nature Methods (2020)

  5. Article

    Open Access

    Integrated analysis of multiple receptor tyrosine kinases identifies Axl as a therapeutic target and mediator of resistance to sorafenib in hepatocellular carcinoma

    Aberrant activation of Axl is implicated in the progression of hepatocellular carcinoma (HCC). We explored the biologic significance and preclinical efficacy of Axl inhibition as a therapeutic strategy in sora...

    David J. Pinato, Matthew W. Brown, Sebastian Trousil in British Journal of Cancer (2019)

  6. No Access

    Reference Work Entry In depth

    AXL

    Matthew W. Brown, David J. Pinato in Encyclopedia of Signaling Molecules (2018)

  7. No Access

    Reference Work Entry In depth

    Apusomonadida

    Apusomonadida is a small group of free-living heterotrophic flagellates. Apusomonads are small (~5–20 μm long) gliding aerobes with two flagella. The dorsal cell membrane is underlain by a pellicle, which also...

    Aaron A. Heiss, Matthew W. Brown, Alastair G. B. Simpson in Handbook of the Protists (2017)

  8. No Access

    Living Reference Work Entry In depth

    Protosteloid Amoebae (Protosteliida, Protosporangiida, Cavosteliida, Schizoplasmodiida, Fractoviteliida, and Sporocarpic Members of Vannellida, Centramoebida, and Pellitida)

    Protosteloid amoebozoans, formerly called protostelids, are a non-monophyletic assemblage of Amoebozoa where, at one point in their development, an amoeba rounds up on the surface of a substrate and develops i...

    Frederick W. Spiegel, Lora L. Shadwick, George G. Ndiritu in Handbook of the Protists

  9. No Access

    Reference Work Entry In depth

    Heterolobosea

    Heterolobosea is a group of ~150 described species of heterotrophs, almost all free living. Many are “amoeboflagellates” with a three-phase asexual life cycle, centered on trophic amoebae that can reversibly t...

    Tomáš Pánek, Alastair G. B. Simpson, Matthew W. Brown in Handbook of the Protists (2017)

  10. No Access

    Reference Work Entry In depth

    Protosteloid Amoebae (Protosteliida, Protosporangiida, Cavosteliida, Schizoplasmodiida, Fractoviteliida, and Sporocarpic Members of Vannellida, Centramoebida, and Pellitida)

    Protosteloid amoebozoans, formerly called protostelids, are a non-monophyletic assemblage of Amoebozoa where, at one point in their development, an amoeba rounds up on the surface of a substrate and develops i...

    Frederick W. Spiegel, Lora L. Shadwick, George G. Ndiritu in Handbook of the Protists (2017)

  11. Article

    Open Access

    Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

    Acanthamoebidae is a “family” level amoebozoan group composed of the genera Acanthamoeba, Protacanthamoeba, and very recently Luapeleamoeba. This clade of amoebozoans has received considerable attention from the ...

    Alexander K. Tice, Lora L. Shadwick, Anna Maria Fiore-Donno in Biology Direct (2016)

  12. No Access

    Article

    Environmental Breviatea harbour mutualistic Arcobacter epibionts

    The cultivation of Lenisia limosa, a newly discovered breviate protist, symbiotically colonized by relatives of the animal-associated bacterium Arcobacter.

    Emmo Hamann, Harald Gruber-Vodicka, Manuel Kleiner, Halina E. Tegetmeyer in Nature (2016)

  13. No Access

    Living Reference Work Entry In depth

    Heterolobosea

    Heterolobosea is a group of ~150 described species of heterotrophs, almost all free living. Many are “amoeboflagellates” with a three-phase asexual life cycle, centered on trophic amoebae that can reversibly t...

    Tomáš Pánek, Alastair G. B. Simpson, Matthew W. Brown in Handbook of the Protists

  14. No Access

    Living Reference Work Entry In depth

    AXL

    Matthew W Brown, David J Pinato in Encyclopedia of Signaling Molecules

  15. No Access

    Living Reference Work Entry In depth

    Apusomonadida

    Apusomonadida is a small group of free-living heterotrophic flagellates. Apusomonads are small (~5–20 μm long) gliding aerobes with two flagella. The dorsal cell membrane is underlain by a pellicle, which also...

    Aaron A. Heiss, Matthew W. Brown, Alastair G. B. Simpson in Handbook of the Protists

  16. No Access

    Chapter

    Timing the Origins of Multicellular Eukaryotes Through Phylogenomics and Relaxed Molecular Clock Analyses

    Multicellularity has evolved many times during eukaryote evolution. Deciphering the evolutionary transitions to multicellularity requires a robust deep phylogeny of eukaryotes to clarify the relationships amon...

    Susan C. Sharpe*, Laura Eme* in Evolutionary Transitions to Multicellular … (2015)

  17. Article

    Open Access

    Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae

    Nucleomorphs are residual nuclei derived from eukaryotic endosymbionts in chlorarachniophyte and cryptophyte algae. The endosymbionts that gave rise to nucleomorphs and plastids in these two algal groups were ...

    Goro Tanifuji, Naoko T Onodera, Matthew W Brown, Bruce A Curtis in BMC Genomics (2014)

  18. Article

    Open Access

    The Capsaspora genome reveals a complex unicellular prehistory of animals

    To reconstruct the evolutionary origin of multicellular animals from their unicellular ancestors, the genome sequences of diverse unicellular relatives are essential. However, only the genome of the choanoflag...

    Hiroshi Suga, Zehua Chen, Alex de Mendoza, Arnau Sebé-Pedrós in Nature Communications (2013)

  19. Article

    Open Access

    Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes

    Elongation factor-1α (EF-1α) and elongation factor-like (EFL) proteins are functionally homologous to one another, and are core components of the eukaryotic translation machinery. The patchy distribution of th...

    Ryoma Kamikawa, Matthew W Brown, Yuki Nishimura, Yoshihiko Sako in BMC Evolutionary Biology (2013)

  20. No Access

    Chapter

    The Non-dictyostelid Sorocarpic Amoebae

    The social life cycle made famous through research on the dictyostelids is not an evolutionary innovation that is solely unique to the dictyostelids. Since 1873, other protistans with similar life styles have ...

    Matthew W. Brown, Jeffrey D. Silberman in Dictyostelids (2013)