-
Article
Identifying keystone species in microbial communities using deep learning
Previous studies suggested that microbial communities can harbour keystone species whose removal can cause a dramatic shift in microbiome structure and functioning. Yet, an efficient method to systematically i...
-
Chapter
Modeling SARS-CoV-2: Mitigation Interventions and Increased Mobility Events
From the beginning of the SARS-CoV-2 pandemic, mathematical models have been developed to describe, predict, and control its evolution. This chapter presents a set of useful mathematical tools to understand th...
-
Article
Coexistence holes characterize the assembly and disassembly of multispecies systems
A central goal of ecological research has been to understand the limits on the maximum number of species that can coexist under given constraints. However, we know little about the assembly and disassembly pro...
-
Article
Open AccessGeneralizing game-changing species across microbial communities
Microbes form multispecies communities that play essential roles in our environment and health. Not surprisingly, there is an increasing need for understanding if certain invader species will modify a given mi...
-
Article
Open AccessAn ecological framework to understand the efficacy of fecal microbiota transplantation
Human gut microbiota plays critical roles in physiology and disease. Our understanding of ecological principles that govern the dynamics and resilience of this highly complex ecosystem remains rudimentary. Thi...
-
Article
Open AccessA theoretical framework for controlling complex microbial communities
Microbes form complex communities that perform critical roles for the integrity of their environment or the well-being of their hosts. Controlling these microbial communities can help us restore natural ecosys...
-
Article
Open AccessMap** the ecological networks of microbial communities
Map** the ecological networks of microbial communities is a necessary step toward understanding their assembly rules and predicting their temporal behavior. However, existing methods require assuming a parti...
-
Article
Network motifs emerge from interconnections that favour stability
Small distinctive patterns or ‘motifs’ are more prevalent in real systems than they are in randomly generated networks. It now seems that these motifs emerge naturally according to a principle that favours int...
