6 Result(s)

Article

Author Correction: Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics

Wei** Sun, Qianqiu Zhang, **yue Zhang, Ngoc Hieu Tran… in Nature Communications (2024)

Article

Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics

Here we present GlycanFinder, a database search and de novo sequencing tool for the analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates peptide-based and glycan-based search s...

Wei** Sun, Qianqiu Zhang, **yue Zhang, Ngoc Hieu Tran… in Nature Communications (2023)

Article

Deep neural network for detecting arbitrary precision peptide features through attention based segmentation

A promising technique of discovering disease biomarkers is to measure the relative protein abundance in multiple biofluid samples through liquid chromatography with tandem mass spectrometry (LC-MS/MS) based qu...

Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei **n… in Scientific Reports (2021)

Article

DeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map

Liquid chromatography with tandem mass spectrometry (LC-MS/MS) based quantitative proteomics provides the relative different protein abundance in healthy and disease-afflicted patients, which offers the inform...

Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei **n… in Scientific Reports (2019)

Article

Complete De Novo Assembly of Monoclonal Antibody Sequences

De novo protein sequencing is one of the key problems in mass spectrometry-based proteomics, especially for novel proteins such as monoclonal antibodies for which genome information is often limited or not availa...

Ngoc Hieu Tran, M. Ziaur Rahman, Lin He, Lei **n, Baozhen Shan… in Scientific Reports (2016)

Article

Hydroclimatological variability and dengue transmission in Dhaka, Bangladesh: a time-series study

While floods can potentially increase the transmission of dengue, only few studies have reported the association of dengue epidemics with flooding. We estimated the effects of river levels and rainfall on the ...

Masahiro Hashizume, Ashraf M Dewan, Toshihiko Sunahara… in BMC Infectious Diseases (2012)