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Article
Open AccessAuthor Correction: Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
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Article
Open AccessGlycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
Here we present GlycanFinder, a database search and de novo sequencing tool for the analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates peptide-based and glycan-based search s...
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Article
Open AccessDeep neural network for detecting arbitrary precision peptide features through attention based segmentation
A promising technique of discovering disease biomarkers is to measure the relative protein abundance in multiple biofluid samples through liquid chromatography with tandem mass spectrometry (LC-MS/MS) based qu...
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Article
Open AccessDeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map
Liquid chromatography with tandem mass spectrometry (LC-MS/MS) based quantitative proteomics provides the relative different protein abundance in healthy and disease-afflicted patients, which offers the inform...
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Article
Open AccessComplete De Novo Assembly of Monoclonal Antibody Sequences
De novo protein sequencing is one of the key problems in mass spectrometry-based proteomics, especially for novel proteins such as monoclonal antibodies for which genome information is often limited or not availa...
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Article
Open AccessHydroclimatological variability and dengue transmission in Dhaka, Bangladesh: a time-series study
While floods can potentially increase the transmission of dengue, only few studies have reported the association of dengue epidemics with flooding. We estimated the effects of river levels and rainfall on the ...
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Article
Integer Representation and Counting in the Bit Probe Model
We examine the problem of integer representation in a nearly minimal number of bits so that the increment and the decrement (and indeed the addition and the subtraction) operations can be performed using few b...
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Chapter and Conference Paper
Integer Representation and Counting in the Bit Probe Model
We examine the problem of integer representation in near minimal number of bits so that increment and decrement (and indeed addition and subtraction) can be performed using few bit inspections and fewer bit ch...
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Chapter and Conference Paper
An Optimal Parallel Algorithm for c-Vertex-Ranking of Trees
For a positive integer c, a c-vertex-ranking of a graph G = (V, E) is a labeling of the vertices of G with integers such that, for any label i, deletion of all vertices with labels > i leaves connected components...
