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Article
Open AccessFirst step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_
Exploring cellular responses to stimuli using extensive gene expression profiles has become a routine procedure performed on a daily basis. Raw and processed data from these studies are available on public dat...
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Article
Open AccessQuery-based biclustering of gene expression data using Probabilistic Relational Models
With the availability of large scale expression compendia it is now possible to view own findings in the light of what is already available and retrieve genes with an expression profile similar to a set of gen...
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Article
Open AccessEvaluation of time profile reconstruction from complex two-color microarray designs
As an alternative to the frequently used "reference design" for two-channel microarrays, other designs have been proposed. These designs have been shown to be more profitable from a theoretical point of view (...
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Article
Open AccessJoint map** of genes and conditions via multidimensional unfolding analysis
Microarray compendia profile the expression of genes in a number of experimental conditions. Such data compendia are useful not only to group genes and conditions based on their similarity in overall expressio...