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  1. Article

    Open Access

    Thrombopoietin mimetic stimulates bone marrow vascular and stromal niches to mitigate acute radiation syndrome

    Acute radiation syndrome (ARS) manifests after exposure to high doses of radiation in the instances of radiologic accidents or incidents. Facilitating regeneration of the bone marrow (BM), namely the hematopoi...

    Justin Vercellino, Beata Małachowska, Shilpa Kulkarni in Stem Cell Research & Therapy (2024)

  2. Article

    Open Access

    Involution of brown adipose tissue through a Syntaxin 4 dependent pyroptosis pathway

    Aging, chronic high-fat diet feeding, or housing at thermoneutrality induces brown adipose tissue (BAT) involution, a process characterized by reduction of BAT mass and function with increased lipid droplet si...

    **aofan Yu, Gabrielle Benitez, Peter Tszki Wei, Sofia V. Krylova in Nature Communications (2024)

  3. No Access

    Article

    The genesis of brown fat—a smooth muscle origin story revisited

    Brown adipose tissue acquires increased thermogenic capacity with prolonged cold exposure through de novo recruitment of brown adipocytes. Studies by Shamsi et al. and Angueira et al. identify novel cellular o...

    Alana Deutsch, Kosaku Shinoda in Nature Metabolism (2021)

  4. No Access

    Article

    Thermal stress induces glycolytic beige fat formation via a myogenic state

    Environmental cues profoundly affect cellular plasticity in multicellular organisms. For instance, exercise promotes a glycolytic-to-oxidative fibre-type switch in skeletal muscle, and cold acclimation induces...

    Yong Chen, Kenji Ikeda, Takeshi Yoneshiro, Annarita Scaramozza, Kazuki Tajima in Nature (2019)

  5. No Access

    Article

    UCP1-independent signaling involving SERCA2b-mediated calcium cycling regulates beige fat thermogenesis and systemic glucose homeostasis

    Calcium cycling induced by the SERCA2b–RyR2 pathway in beige fat cells allows for thermogenic activity independent of UCP1.

    Kenji Ikeda, Qianqian Kang, Takeshi Yoneshiro, Joao Paulo Camporez in Nature Medicine (2017)

  6. No Access

    Article

    Genetic and functional characterization of clonally derived adult human brown adipocytes

    Clonally-derived cell lines of human preadipocytes from BAT biopsies allows for the genetic and functional characterization of adipocytes from this tissue

    Kosaku Shinoda, Ineke H N Luijten, Yutaka Hasegawa, Haemin Hong in Nature Medicine (2015)

  7. No Access

    Article

    EHMT1 controls brown adipose cell fate and thermogenesis through the PRDM16 complex

    Brown adipose tissue-enriched lysine methyltransferase EHMT1 is an essential enzyme in the PRDM16–C/EBP-β transcriptional complex that controls brown adipose cell fate and energy metabolism.

    Haruya Ohno, Kosaku Shinoda, Kana Ohyama, Louis Z. Sharp, Shingo Kajimura in Nature (2013)

  8. Article

    Open Access

    A medium-chain fatty acid as an alternative energy source in mouse preimplantation development

    To further optimize the culturing of preimplantation embryos, we undertook metabolomic analysis of relevant culture media using capillary electrophoresis time-of-flight mass spectrometry (CE-TOFMS). We detecte...

    Mitsutoshi Yamada, Kazumi Takanashi, Toshio Hamatani in Scientific Reports (2012)

  9. Article

    Open Access

    HybGFS: a hybrid method for genome-fingerprint scanning

    Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. However, these methods cannot identify prot...

    Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Naoyuki Sugiyama in BMC Bioinformatics (2006)

  10. Article

    Open Access

    GEM System: automatic prototy** of cell-wide metabolic pathway models from genomes

    Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling approaches to cell simulation are labor-intensive, manual...

    Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yoichi Nakayama in BMC Bioinformatics (2006)

  11. No Access

    Chapter

    The Genome-Based E-CELL Modeling (GEM) System

    Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yoichi Nakayama in Metabolomics (2005)