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  1. Article

    Open Access

    Fastlomap: faster lead optimization mapper algorithm for large-scale relative free energy perturbation

    In recent years, free energy perturbation calculations have garnered increasing attention as tools to support drug discovery. The lead optimization mapper (Lomap) was proposed as an algorithm to calculate the ...

    Kairi Furui, Masahito Ohue in The Journal of Supercomputing (2024)

  2. Article

    Open Access

    Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity

    The structural diversity of chemical libraries, which are systematic collections of compounds that have potential to bind to biomolecules, can be represented by chemical latent space. A chemical latent space i...

    Toshiki Ochiai, Tensei Inukai, Manato Akiyama, Kairi Furui in Communications Chemistry (2023)