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  1. Article

    Open Access

    Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrhea

    Diosmectite, a natural colloidal clay, has been used worldwide for a number of approved indications, including the treatment of chronic functional diarrhea. Here, we used high-resolution whole metagenome shotg...

    Kévin Da Silva, Susie Guilly, Florence Thirion, Emmanuelle Le Chatelier in BMC Microbiology (2022)

  2. Article

    Open Access

    Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

    In pig production systems, weaning is a crucial period characterized by nutritional, environmental, and social stresses. Piglets transition from a milk-based diet to a solid, more complex plant-based diet, and...

    Francesca Romana Massacci, Mustapha Berri, Gaetan Lemonnier in Animal Microbiome (2020)

  3. Article

    Prediction of the intestinal resistome by a three-dimensional structure-based method

    The intestinal microbiota is considered to be a major reservoir of antibiotic resistance determinants (ARDs) that could potentially be transferred to bacterial pathogens via mobile genetic elements. Yet, this ...

    Etienne Ruppé, Amine Ghozlane, Julien Tap, Nicolas Pons in Nature Microbiology (2019)

  4. No Access

    Article

    A reference gene catalogue of the pig gut microbiome

    The pig is a major species for livestock production and is also extensively used as the preferred model species for analyses of a wide range of human physiological functions and diseases1. The importance of the g...

    Liang **ao, Jordi Estellé, Pia Kiilerich, Yuliaxis Ramayo-Caldas in Nature Microbiology (2016)

  5. No Access

    Article

    Transcriptional interactions suggest niche segregation among microorganisms in the human gut

    The human gastrointestinal (GI) tract is the habitat for hundreds of microbial species, of which many cannot be cultivated readily, presumably because of the dependencies between species1. Studies of microbial co...

    Damian Rafal Plichta, Agnieszka Sierakowska Juncker in Nature Microbiology (2016)

  6. No Access

    Reference Work Entry In depth

    Functional Metagenomics of Human Intestinal Microbiome β-Glucuronidase Activity

    Petra Louis, Joël Doré in Encyclopedia of Metagenomics (2015)

  7. No Access

    Reference Work Entry In depth

    Functional Metagenomics of Bacterial-Cell Crosstalk

    Tomas de Wouters, Nicolas Lapaque, Emmanuelle Maguin in Encyclopedia of Metagenomics (2015)

  8. No Access

    Article

    Diversity of H2/CO2-Utilizing Acetogenic Bacteria from Fecesof Non-Methane-Producing Humans

    The purpose of this work was to study H2/CO2-utilizing acetogenic population in the colons of non-methane-producing individuals harboring low numbers of methanogenic archaea. Among the 50 H2-consuming acetogenic...

    Annick Bernalier, Violaine Rochet, Marion Leclerc, Joël Doré in Current Microbiology (1996)