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  1. Article

    Open Access

    Genome evolution in the allotetraploid frog Xenopus laevis

    To explore the origins and consequences of tetraploidy in the African clawed frog, we sequenced the Xenopus laevis genome and compared it to the related diploid X. tropicalis genome. We characterize the allotetra...

    Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod A. Chapman, Atsushi Toyoda in Nature (2016)

  2. Article

    Open Access

    A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

    Polyploid species have long been thought to be recalcitrant to whole-genome assembly. By combining high-throughput sequencing, recent developments in parallel computing, and genetic map**, we derive, de novo, a...

    Jarrod A Chapman, Martin Mascher, Aydın Buluç, Kerrie Barry in Genome Biology (2015)

  3. Article

    Open Access

    Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many ...

    Keith R Bradnam, Joseph N Fass, Anton Alexandrov, Paul Baranay in GigaScience (2013)

  4. Article

    Open Access

    Insights into bilaterian evolution from three spiralian genomes

    Comparative analysis of the genomes of one mollusc (Lottia gigantea) and two annelids (Capitella teleta and Helobdella robusta) enable a more complete reconstruction of genomic features of the last common ancesto...

    Oleg Simakov, Ferdinand Marletaz, Sung-** Cho, Eric Edsinger-Gonzales in Nature (2013)

  5. Article

    Open Access

    The dynamic genome of Hydra

    Hydra, first described by Anton van Leeuwenhoek in a letter to the Royal Society in 1702, has been studied by biologists for centuries and now is an important model for work on axial patterning, stem cell biology...

    Jarrod A. Chapman, Ewen F. Kirkness, Oleg Simakov, Steven E. Hampson in Nature (2010)