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  1. Article

    Open Access

    Anoxygenic phototroph of the Chloroflexota uses a type I reaction centre

    Scientific exploration of phototrophic bacteria over nearly 200 years has revealed large phylogenetic gaps between known phototrophic groups that limit understanding of how phototrophy evolved and diversified1,2....

    J. M. Tsuji, N. A. Shaw, S. Nagashima, J. J. Venkiteswaran, S. L. Schiff… in Nature (2024)

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  2. Article

    Open Access

    Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry

    Life originated in Archaean oceans, almost 4 billion years ago, in the absence of oxygen and the presence of high dissolved iron concentrations. Early Earth oxidation is marked globally by extensive banded iro...

    S. L. Schiff, J. M. Tsuji, L. Wu, J. J. Venkiteswaran, L. A. Molot… in Scientific Reports (2017)

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  3. No Access

    Article

    Microbial dynamics and properties of aerobic granules developed in a laboratory-scale sequencing batch reactor with an intermediate filamentous bulking stage

    Aerobic granules offer enhanced biological nutrient removal and are compact and dense structures resulting in efficient settling properties. Granule instability, however, is still a challenge as understanding ...

    H. Aqeel, M. Basuvaraj, M. Hall, J. D. Neufeld… in Applied Microbiology and Biotechnology (2016)

  4. Article

    Open Access

    Open resource metagenomics: a model for sharing metagenomic libraries

    Both sequence-based and activity-based exploitation of environmental DNA have provided unprecedented access to the genomic content of cultivated and uncultivated microorganisms. Although researchers deposit mi...

    J. D. Neufeld, K. Engel, J. Cheng, G. Moreno-Hagelsieb… in Standards in Genomic Sciences (2011)

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  5. No Access

    Reference Work Entry In depth

    Multiple Displacement Amplification

    This protocol outlines the use of multiple displacement amplification (MDA) as a form of whole-genome amplification (WGA), with application to a number of different analytical techniques in environmental micro...

    J. A. Gilbert, K. Zhang, J. D. Neufeld in Handbook of Hydrocarbon and Lipid Microbiology (2010)

  6. No Access

    Reference Work Entry In depth

    Clone Libraries of Ribosomal RNA Gene Sequences for Characterization of Bacterial and Fungal Communities

    Constructing clone libraries from phylogenetic marker genes is currently the most widely used means of assessing microbial community composition and diversity. Although more expensive and time-consuming than c...

    M. B. Leigh, L. Taylor, J. D. Neufeld in Handbook of Hydrocarbon and Lipid Microbiology (2010)

  7. No Access

    Reference Work Entry In depth

    Denaturing Gradient Gel Electrophoresis (DGGE) for Microbial Community Analysis

    Denaturing gradient gel electrophoresis (DGGE) is a commonly used molecular technique for rapid fingerprint analysis of microbial community composition, diversity, and dynamics. The method is rapid and afforda...

    S. J. Green, M. B. Leigh, J. D. Neufeld in Handbook of Hydrocarbon and Lipid Microbiology (2010)

  8. No Access

    Article

    Characterization of Humus Microbial Communities in Adjacent Forest Types That Differ in Nitrogen Availability

    To address the link between soil microbial community composition and soil processes, we investigated the microbial communities in forest floors of two forest types that differ substantially in nitrogen availab...

    S. E. Leckie, C. E. Prescott, S. J. Grayston, J. D. Neufeld… in Microbial Ecology (2004)