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  1. Article

    Open Access

    Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis

    Single-cell RNA sequencing (scRNA-seq) can characterize cell types and states through unsupervised clustering, but the ever increasing number of cells and batch effect impose computational challenges. We prese...

    **angjie Li, Kui Wang, Yafei Lyu, Huize Pan, **gxiao Zhang in Nature Communications (2020)

  2. Article

    Open Access

    A single-cell transcriptomic landscape of primate arterial aging

    Our understanding of how aging affects the cellular and molecular components of the vasculature and contributes to cardiovascular diseases is still limited. Here we report a single-cell transcriptomic survey o...

    Weiqi Zhang, Shu Zhang, Pengze Yan, Jie Ren, Moshi Song, **gyi Li in Nature Communications (2020)

  3. No Access

    Article

    A protective smooth muscle cell transition in atherosclerosis

    TCF21, a gene associated with coronary heart disease, promotes plaque stability and reduces clinical events by enhancing smooth muscle cell phenotype modulation into “fibromyocytes” in atherosclerosis.

    Huize Pan, Muredach P. Reilly in Nature Medicine (2019)

  4. Article

    Open Access

    SIRT6 safeguards human mesenchymal stem cells from oxidative stress by coactivating NRF2

    SIRT6 belongs to the mammalian homologs of Sir2 histone NAD+-dependent deacylase family. In rodents, SIRT6 deficiency leads to aging-associated degeneration of mesodermal tissues. It remains unknown whether human...

    Huize Pan, Di Guan, **aomeng Liu, **gyi Li, Lixia Wang, Jun Wu in Cell Research (2016)

  5. Article

    Open Access

    A widely adaptable approach to generate integration-free iPSCs from non-invasively acquired human somatic cells

    Zhichao Ding, Lina Sui, Ruotong Ren, Yanjun Liu, **uling Xu, Lina Fu in Protein & Cell (2015)

  6. Article

    Find and replace: editing human genome in pluripotent stem cells

    Genetic manipulation of human pluripotent stem cells (hPSCs) provides a powerful tool for modeling diseases and develo** future medicine. Recently a number of independent genome-editing techniques were devel...

    Huize Pan, Weiqi Zhang, Weizhou Zhang, Guang-Hui Liu in Protein & Cell (2011)