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  1. Article

    Open Access

    Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing

    The massive structural variations and frequent introgression highly contribute to the genetic diversity of wheat, while the huge and complex genome of polyploid wheat hinders efficient genoty** of abundant v...

    Jianxia Niu, Wenxi Wang, Zihao Wang, Zhe Chen, **aoyu Zhang, Zhen Qin in Genome Biology (2024)

  2. Article

    Open Access

    Genome-wide identification and expression analysis of the KNOX family and its diverse roles in response to growth and abiotic tolerance in sweet potato and its two diploid relatives

    KNOXs, a type of homeobox genes that encode atypical homeobox proteins, play an essential role in the regulation of growth and development, hormonal response, and abiotic stress in plants. However, the KNOX gene ...

    Li-Cong Jia, Zi-Tong Yang, Li-Li Shang, Shao-Zhen He, Huan Zhang, Xu Li in BMC Genomics (2024)

  3. No Access

    Article

    Mining, screening, and validation of cold-resistance molecular markers in Vitis vinifera L.

    To address one of the main challenges restricting the development of global viticulture, it is imperative to breed high-quality and cold-resistant grape varieties. In this study, intraspecific cross-breeding w...

    Zhi-Lei Wang, **ng Han, Wen-Long Ma, Guo-Qian Xu, Ting-Ting Xue in Euphytica (2024)

  4. Article

    Open Access

    Map** and characterization of rust resistance genes Lr53 and Yr35 introgressed from Aegilops species

    The rust resistance genes Lr53 and Yr35 were introgressed into bread wheat from Aegilops longissima or Aegilops sharonensis or their S-genome containing species and mapped to the telomeric region of chromosome ar...

    Binyang Xu, Tao Shen, Hong Chen, Hongna Li in Theoretical and Applied Genetics (2024)

  5. Article

    Open Access

    Genetic and phenotypic analysis of 225 Chinese children with developmental delay and/or intellectual disability using whole-exome sequencing

    Developmental delay (DD), or intellectual disability (ID) is a very large group of early onset disorders that affects 1–2% of children worldwide, which have diverse genetic causes that should be identified. Ge...

    Heqian Ma, Lina Zhu, **ao Yang, Meng Ao, Shunxiang Zhang, Meizhen Guo in BMC Genomics (2024)

  6. Article

    Open Access

    Innovative computational tools provide new insights into the polyploid wheat genome

    Bread wheat (Triticum aestivum) is an important crop and serves as a significant source of protein and calories for humans, worldwide. Nevertheless, its large and allopolyploid genome poses constraints on genetic...

    Yongming Chen, Wenxi Wang, Zhengzhao Yang, Huiru Peng, Zhongfu Ni, Qixin Sun in aBIOTECH (2024)

  7. Article

    Open Access

    Magnaporthe oryzae effector AvrPik-D targets a transcription factor WG7 to suppress rice immunity

    Rice blast, caused by the fungal pathogen Magnaporthe oryzae, is one of the most devastating diseases for rice crops, significantly affecting crop yield and quality. During the infection process, M. oryzae secret...

    Tao Yang, Linlin Song, **xian Hu, Luao Qiao, Qing Yu, Zonghua Wang, **aofeng Chen in Rice (2024)

  8. Article

    Open Access

    Chromosome-level genome provides insight into the evolution and conservation of the threatened goral (Naemorhedus goral)

    Gorals Naemorhedus resemble both goats and antelopes, which prompts much debate about the intragenus species delimitation and phylogenetic status of the genus Naemorhedus within the subfamily Caprinae. Their evol...

    Nan Sun, **ao-Ying Ma, Guang-Hong Shi, **ao-Hong Yang, Wei Li in BMC Genomics (2024)

  9. No Access

    Article

    Overexpression of cucumber CYP82D47 enhances resistance to powdery mildew and Fusarium oxysporum f. sp. cucumerinum

    Cytochrome P450s are a large family of protein-encoding genes in plant genomes, many of which have not yet been comprehensively characterized. Here, a novel P450 gene, CYP82D47, was isolated and functionally char...

    Hong-yu Wang, Peng-fei Li, Yu Wang, Chun-yu Chi in Functional & Integrative Genomics (2024)

  10. Article

    Open Access

    Phenotypic diversity analysis of Polygala tenuifolia Willd germplasm resources in China

    Polygala tenuifolia Willd is a perennial herb in the family Polygalaceae and is used as an expectorant and stimulant in traditional Chinese medicine. There is a large demand for P. tenuifolia, while the good cult...

    Hongling Tian, Changjuan Wu, Lijun Zhang in Genetic Resources and Crop Evolution (2024)

  11. Article

    Open Access

    Identification of NADPH Oxidase Genes Crucial for Rice Multiple Disease Resistance and Yield Traits

    Reactive oxygen species (ROS) act as a group of signaling molecules in rice functioning in regulation of development and stress responses. Respiratory burst oxidase homologues (Rbohs) are key enzymes in genera...

    Yong Zhu, Hao Su, **n-**an Liu, Ji-Fen Sun, Ling **ang, Yan-**g Liu, Zhang-Wei Hu in Rice (2024)

  12. No Access

    Protocol

    An Overview of High-Throughput Crop Phenoty**: Platform, Image Analysis, Data Mining, and Data Management

    In this chapter, we explore the application of high-throughput crop phenoty** facilities for phenotype data acquisition and the extraction of significant information from the collected data through image pro...

    Wanneng Yang, Hui Feng, **ao Hu, **gyan Song, **g Guo in Plant Functional Genomics (2024)

  13. No Access

    Article

    Somatic embryo induction and plantlet regeneration of Canna × generalis from immature zygotic embryo

    Somatic embryogenesis is a unique method of in vitro regeneration, which can be used in plant reproduction, germplasm conservation, and molecular-assisted breeding. The results showed that the optimum medium f...

    Zu-yan Gan, Mu-lin Shu, Feng Yang in Plant Cell, Tissue and Organ Culture (PCTO… (2023)

  14. No Access

    Article

    Effects of phosphorus supply and salt stress on plant growth, organic acid concentration, and sodium, potassium, calcium, magnesium, and phosphorus utilization in wheat

    Nutrient utilization efficiency in wheat could be affected by fertilizer supply and soil properties such as salinity. A greenhouse pot study involving two wheat genotypes (Shavano and AK58), two phosphorus (P)...

    De-Yong Zhao, Zai-Wang Zhang, Guo-Lan Liu in Cereal Research Communications (2023)

  15. No Access

    Article

    Identification and Analysis of Characteristic Flavour Compounds in Baked Potato of Different Cultivars Based on HS-GC-IMS

    In this study, the volatile flavour compounds of baked potatoes from different cultivars were identified and analysed via headspace–gas chromatography–ion mobility spectrometry (HS-GC-IMS) together with princi...

    Wen-sheng Duan, Hong Jiang, **ao-feng Liu, Guo-hong Wen, Ai-lan Zhou in Potato Research (2023)

  16. No Access

    Article

    Mutation of a highly conserved amino acid in RPM1 causes leaf yellowing and premature senescence in wheat

    A point mutation of RPM1 triggers persistent immune response that induces leaf premature senescence in wheat, providing novel information of immune responses and leaf senescence.

    Wenjia Zhang, Zhaoheng Zhang, Qian Chen, Zihao Wang in Theoretical and Applied Genetics (2023)

  17. No Access

    Article

    CDK6 is a novel predictive and prognosis biomarker correlated with immune infiltrates in multiple human neoplasms, including small cell lung carcinoma

    The roles of cyclin-dependent kinase 6 (CDK6) in various cancers, including small cell lung carcinoma (SCLC), remain unclear. Here, 111,54 multi-center samples were investigated to determine the expression, clini...

    Guo-Sheng Li, Zhi-Guang Huang, Dong-Ming Li in Functional & Integrative Genomics (2023)

  18. Article

    Open Access

    Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

    Jennifer R. S. Meadows, Jefrey M. Kidd, Guo-Dong Wang, Heidi G. Parker in Genome Biology (2023)

  19. Article

    Open Access

    Transcriptome analysis reveals a lncRNA-miRNA-mRNA regulatory network in OsRpp30-mediated disease resistance in rice

    Long non-coding RNAs (lncRNAs) play critical roles in various biological processes in plants. Extensive studies utilizing high-throughput RNA sequencing have revealed that many lncRNAs are involved in plant di...

    Minghua Li, Wei Li, Meixia Zhao, Zhiqiang Li, Guo-Liang Wang, Wende Liu in BMC Genomics (2023)

  20. No Access

    Article

    Interaction between SlMAPK3 and SlASR4 regulates drought resistance in tomato (Solanum lycopersicum L.)

    Tomato is a leading vegetable in modern agriculture, and with global warming, drought has become an important factor threatening tomato production. Mitogen-activated protein kinase 3 (MAPK3) plays an important...

    **n Huang, Jian-Ming Wei, Wen-Zhuo Feng, Qing Luo, Guo-Fei Tan in Molecular Breeding (2023)

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