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  1. Chapter and Conference Paper

    Detecting and Tracking the Tips of Fluorescently Labeled Mitochondria in U2OS Cells

    We present a method for automatically detecting the tips of fluorescently labeled mitochondria. The method is based on a Random Forest classifier, which is trained on small patches extracted from confocal micr...

    Eero Lihavainen, Jarno Mäkelä… in Image Analysis and Processing — ICIAP 2015 (2015)

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  2. Article

    Open Access

    ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis

    Zebrafish embryos have recently been established as a xenotransplantation model of the metastatic behaviour of primary human tumours. Current tools for automated data extraction from the microscope images are ...

    Teppo Annila, Eero Lihavainen, Ines J Marques, Darren R Williams… in BMC Bioinformatics (2013)

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  3. Article

    Open Access

    Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter

    Gene expression in Escherichia coli is regulated by several mechanisms. We measured in single cells the expression level of a single copy gene coding for green fluorescent protein (GFP), integrated into the genom...

    Olli-Pekka Smolander, Meenakshisundaram Kandhavelu… in BMC Molecular Biology (2011)

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