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  1. Book Series

  2. No Access

    Chapter

    Introduction to Natural Language Processing of Clinical Text

    Clinical and biomedical natural language processing (NLP) has a wide range of practical applications in clinical and biomedical research, quality assurance of clinical care and delivery of information to patie...

    Dina Demner Fushman, Hua Xu in Natural Language Processing in Biomedicine (2024)

  3. No Access

    Chapter

    Development of Clinical NLP Systems

    The primary objective of this chapter is to offer an extensive overview of the development of clinical Natural Language Processing (NLP) systems. We will commence by examining several existing clinical NLP sys...

    Hua Xu, Dina Demner Fushman in Natural Language Processing in Biomedicine (2024)

  4. No Access

    Chapter

    NLP Applications—Other Biomedical Texts

    This chapter introduces sublanguages complementary to the biomedical literature, clinical notes, and social media. These sublanguages are found in drug labels, descriptions of clinical trials in the official r...

    Kirk Roberts, Hua Xu, Dina Demner Fushman in Natural Language Processing in Biomedicine (2024)

  5. No Access

    Chapter

    Overview of Linguistic Information

    This chapter provides a brief overview of linguistic information, and its relevance to clinical text processing. The contents of this chapter will be familiar to the readers who had to identify the words that ...

    Dina Demner Fushman, Carol Friedman in Natural Language Processing in Biomedicine (2024)

  6. No Access

    Chapter

    Medical Concept Normalization

    Medical concept normalization, which maps clinical entities to concepts in standard terminology, is essential for supporting downstream computational applications in clinical settings. This chapter starts with...

    Hua Xu, Dina Demner Fushman, Na Hong in Natural Language Processing in Biomedicine (2024)

  7. No Access

    Book

  8. No Access

    Chapter

    Question Answering

    Question answering refers to the process of providing direct and precise answers to natural language questions. Biomedical question answering is a task directed towards aiding researchers, healthcare professio...

    Dina Demner Fushman in Natural Language Processing in Biomedicine (2024)

  9. Article

    Open Access

    Publisher Correction: Large language models encode clinical knowledge

    Karan Singhal, Shekoofeh Azizi, Tao Tu, S. Sara Mahdavi, Jason Wei in Nature (2023)

  10. Article

    Open Access

    Large language models encode clinical knowledge

    Large language models (LLMs) have demonstrated impressive capabilities, but the bar for clinical applications is high. Attempts to assess the clinical knowledge of models typically rely on automated evaluation...

    Karan Singhal, Shekoofeh Azizi, Tao Tu, S. Sara Mahdavi, Jason Wei in Nature (2023)

  11. Article

    Open Access

    CHQ- SocioEmo: Identifying Social and Emotional Support Needs in Consumer-Health Questions

    General public, often called consumers, are increasingly seeking health information online. To be satisfactory, answers to health-related questions often have to go beyond informational needs. Automated approa...

    Ashwag Alasmari, Luke Kudryashov, Shweta Yadav, Heera Lee in Scientific Data (2023)

  12. Article

    Open Access

    A dataset for medical instructional video classification and question answering

    This paper introduces a new challenge and datasets to foster research toward designing systems that can understand medical videos and provide visual answers to natural language questions. We believe medical vi...

    Deepak Gupta, Kush Attal, Dina Demner-Fushman in Scientific Data (2023)

  13. Article

    Open Access

    A dataset for plain language adaptation of biomedical abstracts

    Though exponentially growing health-related literature has been made available to a broad audience online, the language of scientific articles can be difficult for the general public to understand. Therefore, ...

    Kush Attal, Brian Ondov, Dina Demner-Fushman in Scientific Data (2023)

  14. Article

    Open Access

    Automatic question answering for multiple stakeholders, the epidemic question answering dataset

    One of the effects of COVID-19 pandemic is a rapidly growing and changing stream of publications to inform clinicians, researchers, policy makers, and patients about the health, socio-economic, and cultural co...

    Travis R. Goodwin, Dina Demner-Fushman, Kyle Lo, Lucy Lu Wang in Scientific Data (2022)

  15. No Access

    Chapter and Conference Paper

    The 2021 ImageCLEF Benchmark: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications

    This paper presents the ideas for the 2021 ImageCLEF lab that will be organized as part of the Conference and Labs of the Evaluation Forum—CLEF Labs 2021 in Bucharest, Romania. ImageCLEF is an ongoing evaluati...

    Bogdan Ionescu, Henning Müller, Renaud Péteri in Advances in Information Retrieval (2021)

  16. No Access

    Chapter and Conference Paper

    Overview of the ImageCLEF 2021: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications

    This paper presents an overview of the ImageCLEF 2021 lab that was organized as part of the Conference and Labs of the Evaluation Forum – CLEF Labs 2021. ImageCLEF is an ongoing evaluation initiative (first ru...

    Bogdan Ionescu, Henning Müller in Experimental IR Meets Multilinguality, Mul… (2021)

  17. No Access

    Chapter

    Natural Language Processing for Health-Related Texts

    Narrative text is an important component of communication in health care, including patient-specific information in health record reports and notes and general biomedical knowledge papers, textbooks and web re...

    Dina Demner-Fushman, Noémie Elhadad, Carol Friedman in Biomedical Informatics (2021)

  18. Article

    Open Access

    Question-driven summarization of answers to consumer health questions

    Automatic summarization of natural language is a widely studied area in computer science, one that is broadly applicable to anyone who needs to understand large quantities of information. In the medical domain...

    Max Savery, Asma Ben Abacha, Soumya Gayen, Dina Demner-Fushman in Scientific Data (2020)

  19. Chapter and Conference Paper

    ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications

    This paper presents an overview of the 2020 ImageCLEF lab that will be organized as part of the Conference and Labs of the Evaluation Forum—CLEF Labs 2020 in Thessaloniki, Greece. ImageCLEF is an ongoing eval...

    Bogdan Ionescu, Henning Müller, Renaud Péteri in Advances in Information Retrieval (2020)

  20. No Access

    Chapter and Conference Paper

    Overview of the ImageCLEF 2020: Multimedia Retrieval in Medical, Lifelogging, Nature, and Internet Applications

    This paper presents an overview of the ImageCLEF 2020 lab that was organized as part of the Conference and Labs of the Evaluation Forum - CLEF Labs 2020. ImageCLEF is an ongoing evaluation initiative (first ru...

    Bogdan Ionescu, Henning Müller in Experimental IR Meets Multilinguality, Mul… (2020)

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