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De novo derivation of proteomes from transcriptomes for transcript and protein identification

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  1. Article

    The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets

    SARS-CoV-2 entry requires sequential cleavage of the spike glycoprotein at the S1/S2 and the S2ʹ cleavage sites to mediate membrane fusion. SARS-CoV-2 has a polybasic insertion (PRRAR) at the S1/S2 cleavage si...

    Thomas P. Peacock, Daniel H. Goldhill, Jie Zhou, Laury Baillon in Nature Microbiology (2021)

  2. Article

    Open Access

    Deep splicing plasticity of the human adenovirus type 5 transcriptome drives virus evolution

    Viral genomes have high gene densities and complex transcription strategies rendering transcriptome analysis through short-read RNA-seq approaches problematic. Adenovirus transcription and splicing is especial...

    I’ah Donovan-Banfield, Andrew S. Turnell, Julian A. Hiscox in Communications Biology (2020)

  3. Article

    Open Access

    Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection

    Nelson Bay orthoreovirus (NBV) is a fusogenic bat borne virus with an unknown zoonotic potential. Previous studies have shown that NBV can infect and replicate in a wide variety of cell types derived from thei...

    Lawrence Mok, James W. Wynne, Mary Tachedjian, Brian Shiell, Kris Ford in BMC Genomics (2017)

  4. Article

    Open Access

    Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti

    Aedes aegypti is a vector for the (re-)emerging human pathogens dengue, chikungunya, yellow fever and Zika viruses. Almost half of the Ae. aegypti genome is comprised of transposable e...

    Kevin Maringer, Amjad Yousuf, Kate J. Heesom, Jun Fan, David Lee in BMC Genomics (2017)