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    Book and Conference Proceedings

    Asia Pacific Advanced Network

    56th International Conference, APANConf 2023, Colombo, Sri Lanka, August 24–25, 2023, Revised Selected Papers

    Damayanthi Herath, Susumu Date in Communications in Computer and Information Science (2024)

  2. Article

    Open Access

    Analyzing transportation mode interactions using agent-based models

    Traffic in urban areas contributes significantly to congestion and air pollution, which contributes to climate change issues and causes economic losses and fuel wastage. Agent-based models have significant adv...

    Nimashi Uthpala, Nanduni Hansika, Sachini Dissanayaka in SN Applied Sciences (2023)

  3. Article

    Open Access

    DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing

    Nanopore sequencing allows selective sequencing, the ability to programmatically reject unwanted reads in a sample. Selective sequencing has many present and future applications in genomics research and the cl...

    Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath in BMC Bioinformatics (2023)

  4. Article

    Open Access

    ENVirT: inference of ecological characteristics of viruses from metagenomic data

    Estimating the parameters that describe the ecology of viruses,particularly those that are novel, can be made possible using metagenomic approaches. However, the best-performing existing methods require databa...

    Duleepa Jayasundara, Damayanthi Herath, Damith Senanayake in BMC Bioinformatics (2019)

  5. Article

    Open Access

    CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision

    In metagenomics, the separation of nucleotide sequences belonging to an individual or closely matched populations is termed binning. Binning helps the evaluation of underlying microbial population structure as...

    Damayanthi Herath, Sen-Lin Tang, Kshitij Tandon, David Ackland in BMC Bioinformatics (2017)