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  1. Article

    Open Access

    Integrated molecular and multiparametric MRI map** of high-grade glioma identifies regional biologic signatures

    Sampling restrictions have hindered the comprehensive study of invasive non-enhancing (NE) high-grade glioma (HGG) cell populations driving tumor progression. Here, we present an integrated multi-omic analysis...

    Leland S. Hu, Fulvio D’Angelo, Taylor M. Weiskittel in Nature Communications (2023)

  2. Article

    Open Access

    Molecular subtypes of ALS are associated with differences in patient prognosis

    Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disease with poorly understood clinical heterogeneity, underscored by significant differences in patient age at onset, symptom progression, therapeuti...

    Jarrett Eshima, Samantha A. O’Connor, Ethan Marschall in Nature Communications (2023)

  3. Article

    Open Access

    N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis

    Many of the regulatory features governing erythrocyte specification, maturation, and associated disorders remain enigmatic. To identify new regulators of erythropoiesis, we utilize a functional genomic screen ...

    Daniel A. Kuppers, Sonali Arora, Yiting Lim, Andrea R. Lim in Nature Communications (2019)

  4. Article

    Open Access

    Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions

    Biclustering is a popular method for identifying under which experimental conditions biological signatures are co-expressed. However, the general biclustering problem is NP-hard, offering room to focus algorit...

    Samuel A Danziger, David J Reiss, Alexander V Ratushny in BMC Systems Biology (2015)

  5. Article

    Open Access

    Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

    Expansion of transcription factors is believed to have played a crucial role in evolution of all organisms by enabling them to deal with dynamic environments and colonize new environments. We investigated how ...

    Christopher L Plaisier, Fang-Yin Lo, Justin Ashworth, Aaron N Brooks in BMC Systems Biology (2014)

  6. Article

    Open Access

    A nonsynonymous SNP within PCDH15 is associated with lipid traits in familial combined hyperlipidemia

    Familial combined hyperlipidemia (FCHL) is a common lipid disorder characterized by the presence of multiple lipoprotein phenotypes that increase the risk of premature coronary heart disease. In a previous stu...

    Adriana Huertas-Vazquez, Christopher L. Plaisier, Ruishuang Geng in Human Genetics (2010)